| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 997,868 | Δ6,818 bp | [elfA]–ycbF | [elfA], elfD, elfC, elfG, ycbU, ycbV, ycbF | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 997868 | 1004685 | 6818 | 116 [0] | [0] 113 | [elfA]–ycbF | [elfA],elfD,elfC,elfG,ycbU,ycbV,ycbF |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 997867 | 0 (0.000) | 112 (1.030) | 67/98 | 0.0 | 100% | intergenic (‑355/‑1) | ssuE/elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| ? | NC_000913 | 1004686 = | 0 (0.000) | intergenic (+29/‑82) | ycbF/pyrD | putative fimbrial chaperone YcbF/dihydroorotate dehydrogenase, type 2 | |||||
Only 100 of 113 total aligned reads displayed.
AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 | tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt > 1:7706776‑M2/50‑50 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:5494706‑M2/1‑1 (MQ=255)tgtcatttaaaggcattatcatatttacgaagagatcaggatgataacgt < 1:4107160‑M2/1‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:2277488‑M2/3‑1 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt > 1:5450808‑M2/48‑50 (MQ=255) tcatttaaaggcattatcatatttacgaagagatcaggatgataacgttt < 1:7576736‑M2/3‑1 (MQ=255) catttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg > 1:1246248‑M2/47‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTg < 1:2132899‑M2/4‑1 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:2914836‑M2/46‑50 (MQ=255) atttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGc > 1:8188502‑M2/46‑50 (MQ=255) tttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGcc > 1:4746477‑M2/45‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:1346859‑M2/44‑50 (MQ=255) ttaaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:5447109‑M2/44‑50 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:7029862‑M2/43‑49 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:1294391‑M2/43‑49 (MQ=255) taaaggcattatcatatttacgaagagatcaggatgataacgTTTGCCg > 1:4839074‑M2/43‑49 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCa < 1:1291183‑M2/9‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCa < 1:4887914‑M2/9‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg < 1:4594251‑M2/10‑1 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:1745761‑M2/41‑50 (MQ=255) aaggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAg > 1:1952743‑M2/41‑50 (MQ=255) aggcattatcatatttacgaagagatcaagatgataacgTTTGCCGCAgg < 1:4615685‑M2/11‑1 (MQ=255) ggcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGt > 1:2073996‑M2/39‑50 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc < 1:8263768‑M2/13‑1 (MQ=255) gcattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc < 1:2090921‑M2/13‑1 (MQ=255) cattatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTc > 1:5063405‑M2/37‑49 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:4483844‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:6932121‑M2/36‑50 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa < 1:8322132‑M2/15‑1 (MQ=255) attatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCaa > 1:1456470‑M2/36‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt > 1:725353‑M2/35‑50 (MQ=255) ttatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAt < 1:4191496‑M2/16‑1 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:6331651‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:149642‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:7519356‑M2/34‑50 (MQ=255) tatcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt > 1:3993881‑M2/34‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAAtt < 1:6774214‑M2/17‑1 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:6837249‑M2/33‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:117963‑M2/33‑50 (MQ=255) atcatatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTc > 1:6095285‑M2/33‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:3566512‑M2/31‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:4147473‑M2/31‑50 (MQ=255) catatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc > 1:4362049‑M2/31‑50 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTccc < 1:1961362‑M2/20‑1 (MQ=255) atatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCt > 1:279633‑M2/30‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:6116913‑M2/29‑50 (MQ=255) tatttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtt > 1:696860‑M2/29‑50 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:6340006‑M2/28‑50 (MQ=255) atttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCttt > 1:2409635‑M2/28‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt > 1:1380135‑M2/27‑50 (MQ=255) tttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCtttt < 1:7173790‑M2/24‑1 (MQ=255) ttacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTg > 1:3111146‑M2/26‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:5784111‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:5731935‑M2/25‑50 (MQ=255) tacgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg > 1:1556619‑M2/25‑50 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg < 1:4203335‑M2/26‑1 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTgg < 1:1527625‑M2/26‑1 (MQ=255) acgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt > 1:3505100‑M2/24‑50 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGt < 1:4155613‑M2/27‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc < 1:3983106‑M2/28‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc < 1:3526236‑M2/28‑1 (MQ=255) cgaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTc > 1:4198286‑M2/23‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:6100033‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:4836867‑M2/22‑50 (MQ=255) gaagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:1259492‑M2/22‑50 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:1009492‑M2/21‑49 (MQ=255) aagagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTcc > 1:2786784‑M2/21‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:1837563‑M2/20‑49 (MQ=255) agagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCg > 1:4578151‑M2/20‑49 (MQ=255) gagatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGaa > 1:1674241‑M2/19‑50 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc < 1:1197286‑M2/33‑1 (MQ=255) agatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAAc > 1:5088320‑M2/18‑50 (MQ=255) gatcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACt > 1:6310250‑M2/17‑50 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc < 1:21359‑M2/35‑1 (MQ=255) atcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTc > 1:6194098‑M2/16‑50 (MQ=255) tcaggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:8114474‑M2/15‑50 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:7820423‑M2/14‑49 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:763226‑M2/14‑49 (MQ=255) caggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCg > 1:2852779‑M2/14‑49 (MQ=255) aggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca < 1:2791491‑M2/38‑1 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGca > 1:2701544‑M2/12‑49 (MQ=255) ggatgataacgTTTGCCGCAGGTCAATTCCCGTTTGGTCCGAACTCGcac < 1:6830‑M2/39‑1 (MQ=255) gatgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGcaca > 1:2132224‑M2/11‑50 (MQ=255) atgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat < 1:4966407‑M2/41‑1 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACata < 1:6865225‑M2/42‑1 (MQ=255) tgataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACat > 1:4969261‑M2/9‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataat < 1:5524052‑M2/44‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:5392185‑M2/7‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa > 1:3434721‑M2/7‑49 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:5675342‑M2/43‑1 (MQ=255) ataacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACataa < 1:4806397‑M2/43‑1 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:7764457‑M2/5‑50 (MQ=255) aacgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc > 1:1556397‑M2/5‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATAc < 1:4654271‑M2/46‑1 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:7816484‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg > 1:7418705‑M2/4‑50 (MQ=255) acgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACg < 1:3200901‑M2/47‑1 (MQ=255) cgTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGc < 1:3453471‑M2/48‑1 (MQ=255) gTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGcc > 1:7677180‑M2/2‑50 (MQ=255) tttGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGccc > 1:7822653/1‑50 (MQ=255) | AAGGAGCAAAATCTGCCCTGAAACAGGTTCGGAAAACGTTTGCGTTTTTTTTGCCGCAGGTCAATTCCCTTTTGGTCCGAACTCGCACATAATACGCCC > NC_000913/1004637‑1004735 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |