BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	2,601,201	Δ13,595 bp		[hyfA]–focB	[hyfA], hyfB, hyfC, hyfD, hyfE, hyfF, hyfG, hyfH, hyfI, hyfJ, hyfR, focB

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	2601201	2614795	13595	136 [0]	[0] 132	[hyfA]–focB	[hyfA],hyfB,hyfC,hyfD,hyfE,hyfF,hyfG,hyfH,hyfI,hyfJ,hyfR,focB

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2601200	0 (0.000)	132 (1.210)	67/98	0.0	100%	intergenic (+252/‑1)	bcp/hyfA	thiol peroxidase/hydrogenase 4 component A
*	?	NC_000913	2614796 =	0 (0.000)	132 (1.210)	67/98	0.0	100%	intergenic (+14/+24)	focB/yfgO	putative formate transporter/putative transporter YfgO

Only 100 of 132 total aligned reads displayed.

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCG  >  NC_000913/2614747‑2614844

tttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  >  1:145659‑M2/50‑50 (MQ=255)

tttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  >  1:6666977‑M2/50‑50 (MQ=255)

 ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  >  1:4867755‑M2/49‑49 (MQ=255)

 ttatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  >  1:6495276‑M2/49‑49 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgaccg                                                 >  1:3432306‑M2/48‑49 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  <  1:1108588‑M2/1‑1 (MQ=255)

  tatgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacc                                                  <  1:159583‑M2/1‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                              <  1:7068965‑M2/5‑1 (MQ=255)

    tgcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                              <  1:1473547‑M2/5‑1 (MQ=255)

     gcaatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                              >  1:8327034‑M2/45‑49 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGaaa                                              >  1:4870175‑M2/44‑48 (MQ=255)

      caatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACa                                            <  1:4923058‑M2/7‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                           <  1:7443921‑M2/8‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                           >  1:6578201‑M2/43‑50 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                           <  1:4246525‑M2/8‑1 (MQ=255)

       aatatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAg                                           <  1:5410426‑M2/8‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                          <  1:292845‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                          <  1:2781269‑M2/9‑1 (MQ=255)

        atatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGt                                          >  1:4372161‑M2/42‑50 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                         <  1:7559656‑M2/10‑1 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                         <  1:5491439‑M2/10‑1 (MQ=255)

         tatgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGtt                                         >  1:3468655‑M2/41‑50 (MQ=255)

          atgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                        >  1:5866966‑M2/40‑50 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                        <  1:2014481‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                        <  1:8063498‑M2/11‑1 (MQ=255)

           tgaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtc                                        <  1:5494640‑M2/11‑1 (MQ=255)

            gaaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgt                                      >  1:4454538‑M2/38‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                     <  1:4627039‑M2/14‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                     <  1:1218997‑M2/14‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                     <  1:3898364‑M2/14‑1 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                     >  1:8268991‑M2/37‑50 (MQ=255)

             aaatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtc                                     >  1:7291160‑M2/37‑50 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                    >  1:5143631‑M2/36‑50 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                    <  1:7461042‑M2/15‑1 (MQ=255)

              aatgcaatgtttcatatcattttcaaggagccgacCGAAACAGTtcgtcg                                    <  1:2460264‑M2/15‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                   <  1:2275906‑M2/16‑1 (MQ=255)

               atgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCgg                                   <  1:4270417‑M2/16‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  <  1:5108109‑M2/17‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  >  1:6073532‑M2/34‑50 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  >  1:3588225‑M2/34‑50 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  >  1:3308098‑M2/34‑50 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  <  1:6288233‑M2/17‑1 (MQ=255)

                tgcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCggg                                  <  1:6474534‑M2/17‑1 (MQ=255)

                 gcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc                                 >  1:5434152‑M2/33‑50 (MQ=255)

                 gcaatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGc                                 >  1:6941497‑M2/33‑50 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                >  1:4561110‑M2/32‑50 (MQ=255)

                  caatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                <  1:8177709‑M2/19‑1 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                >  1:6168381‑M2/31‑49 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCt                                >  1:757186‑M2/31‑49 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               <  1:5451233‑M2/20‑1 (MQ=255)

                   aatgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               <  1:504938‑M2/20‑1 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               >  1:4642035‑M2/29‑48 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               >  1:6058288‑M2/29‑48 (MQ=255)

                     tgtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGaa                             <  1:142875‑M2/22‑1 (MQ=255)

                      gtttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               >  1:1307549‑M2/28‑47 (MQ=255)

                       tttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTg                               >  1:1544110‑M2/27‑46 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                          >  1:182624‑M2/26‑50 (MQ=255)

                        ttcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                          >  1:7813989‑M2/26‑50 (MQ=255)

                         tcatatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGat                          <  1:5670980‑M2/25‑1 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                        >  1:2336711‑M2/24‑50 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                        >  1:3067459‑M2/24‑50 (MQ=255)

                          catatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatt                         <  1:5299928‑M2/26‑1 (MQ=255)

                           atatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGatta                        <  1:2698158‑M2/27‑1 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                      <  1:271563‑M2/29‑1 (MQ=255)

                            tatcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGattatt                      >  1:6320025‑M2/22‑50 (MQ=255)

                             atcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                     >  1:370847‑M2/21‑50 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                     <  1:5904615‑M2/30‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTc                     <  1:7308435‑M2/30‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                    <  1:1347038‑M2/31‑1 (MQ=255)

                              tcattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCt                    <  1:4423547‑M2/31‑1 (MQ=255)

                               cattttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                   >  1:3233220‑M2/19‑50 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCtt                   <  1:6845644‑M2/32‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                  <  1:666121‑M2/33‑1 (MQ=255)

                                attttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTg                  <  1:4903050‑M2/33‑1 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                 <  1:3356480‑M2/34‑1 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgc                 <  1:1586927‑M2/34‑1 (MQ=255)

                                 ttttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCCTgc                 <  1:1704352‑M2/34‑1 (MQ=255)

                                   ttcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc               >  1:5729599‑M2/15‑50 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc               >  1:883732‑M2/14‑49 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc               >  1:1246961‑M2/14‑49 (MQ=255)

                                    tcaaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTgcgc               >  1:4622577‑M2/14‑49 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGcgcg              <  1:6419468‑M2/37‑1 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa             >  1:4979651‑M2/13‑50 (MQ=255)

                                     caaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGa             >  1:3952088‑M2/13‑50 (MQ=255)

                                      aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt            >  1:5875054‑M2/12‑50 (MQ=255)

                                      aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt            >  1:6106666‑M2/12‑50 (MQ=255)

                                      aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt            >  1:7465387‑M2/12‑50 (MQ=255)

                                      aaggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAt            >  1:6607398‑M2/12‑50 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt           >  1:2025683‑M2/11‑50 (MQ=255)

                                       aggagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGAtt           >  1:921590‑M2/11‑50 (MQ=255)

                                         gagccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTg         <  1:2390253‑M2/42‑1 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGcc       >  1:2947359‑M2/6‑49 (MQ=255)

                                            ccgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGcc       >  1:7409506‑M2/6‑49 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCa     <  1:7356559‑M2/46‑1 (MQ=255)

                                             cgacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCa     >  1:5499940‑M2/5‑50 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt    <  1:5687629‑M2/47‑1 (MQ=255)

                                              gacCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCAt    <  1:4788044‑M2/47‑1 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc   >  1:1005434‑M2/3‑50 (MQ=255)

                                               acCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATc   <  1:716784‑M2/48‑1 (MQ=255)

                                                cCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCg  <  1:6777261‑M2/49‑1 (MQ=255)

TGTTATCGGGCTATTTATTTACGTCAGGAACCCTGAAAAATCAGCCCGGCGAAACAGTTCGTCGGGCTGAAGATTATTCTTGCGCGATTTGCCCATCG  >  NC_000913/2614747‑2614844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`