| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 74 [0] | [0] 74 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 72 (0.670) | 47/98 | 0.2 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 CGTCGATGCCAAATGCGCCGCCCTAAAGCAGCGCATCCGCAATGATGTGG < 1:3589581/50‑1CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGG < 1:7918458/50‑1 GTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGA < 1:6552833/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA > 1:1354698/1‑50 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:7729784/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:6347785/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA < 1:5426815/50‑1 TCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAA > 1:3049543/1‑50 CGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC > 1:2155769/1‑50 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG < 1:5878951/50‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACG < 1:5021272/50‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC < 1:7007767/49‑1 GATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAAC < 1:1621150/49‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC > 1:1126946/1‑50 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC < 1:5055185/50‑1 ATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGC > 1:5028792/1‑50 TGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 1:1948653/1‑50 TGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG < 1:770853/50‑1 TGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCG > 1:3868146/1‑50 CAAATGCGCCACCCTAAAGCAGTGCATCCGCAATGATGTGGAACGCGCAA > 1:2013278/1‑50 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATG < 1:8311680/50‑1 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAAT > 1:2791036/1‑49 AATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGAGGAACGCGCAAT > 1:5179017/1‑49 ATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGA < 1:1533997/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:2872237/1‑50 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA < 1:7592223/50‑1 CGCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGA > 1:4780964/1‑50 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT > 1:7920000/1‑50 GCCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGAT < 1:8290187/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:8019872/50‑1 CCACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATC < 1:7834922/50‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:8277396/50‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA > 1:1357771/1‑50 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:1514322/50‑1 CACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCA < 1:2369605/50‑1 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT > 1:5402635/1‑50 ACCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCAT < 1:3974070/50‑1 CCCTAAAGCGGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:5434631/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC > 1:466985/1‑50 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:7281201/50‑1 CCCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATC < 1:3921238/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 1:1047671/50‑1 CCTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCC < 1:6162890/50‑1 CTAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCA > 1:4325901/1‑50 TAAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCAT > 1:5071934/1‑50 AAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC > 1:787227/1‑50 AAAGCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATC > 1:415397/1‑50 AAGCAGCGCATCCGCAATGATATGGAACGCGCAATGACGATCATCCAT < 1:4912548/48‑1 GCAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTC < 1:1476087/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:1684174/1‑50 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT < 1:6001481/50‑1 CAGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCT > 1:2279897/1‑50 AGCGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTG < 1:7041408/50‑1 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:2294536/1‑50 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:7257886/1‑50 CGCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCT > 1:6241778/1‑50 GCATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTT < 1:6419022/50‑1 CATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTG < 1:2822688/50‑1 ATCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:4458392/1‑50 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:1504892/50‑1 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCC < 1:8095417/50‑1 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:6298093/1‑49 TCCGCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGC > 1:5783789/1‑49 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGT < 1:1440810/50‑1 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAG > 1:7715990/1‑49 GCAATGATGTGGAACGCGCAATGACGATCATCCATCCGCTGCTTGCCAGT < 1:6110112/50‑1 AATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG < 1:3757985/50‑1 ATGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGT < 1:2649570/50‑1 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:1435422/1‑48 TGATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAG > 1:2650760/1‑48 ATGTGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGC > 1:5311351/1‑50 TGGGACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > 1:5085647/1‑50 CGTCGATGCCAAATGCGCCACCCTAAAGCAGCGCATCCGCAATGATGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/508825‑508872‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCA > NC_000913/549617‑549665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |