| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 508,873 | Δ40,744 bp | copA–[ylbE] | 37 genes copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbH, ybbD, ylbI, ylbG, selU, allS, allA, allR, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, [ylbE] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 508873 | 549616 | 40744 | 74 [0] | [0] 74 | copA–[ylbE] | copA,copA,copA,glsA,ybaT,cueR,ybbJ,qmcA,fetA,fetB,cnoX,ybbO,tesA,ybbA,ybbP,rhsD,ybbC,ylbH,ybbD,ylbI,ylbG,selU,allS,allA,allR,gcl,hyi,glxR,ybbW,allB,ybbY,glxK,allE,allC,allD,fdrA,[ylbE] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 508872 | 0 (0.000) | 72 (0.670) | 47/98 | 0.2 | 100% | intergenic (+313/+3) | ybaQ/copA | putative DNA‑binding transcriptional regulator YbaQ/Cu(+) exporting P‑type ATPase |
| ? | NC_000913 | 549617 = | 0 (0.000) | intergenic (+1/‑10) | ylbE/ylbF | DUF1116 domain‑containing protein YlbE/DUF2877 domain‑containing protein YlbF | |||||
TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 | cgtcgatgccaaatgcgccgccctaaagcagcgcatccgcaatgatgtgg < 1:3589581‑M2/2‑1 (MQ=255)cgtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtgg < 1:7918458‑M2/2‑1 (MQ=255) gtcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGa < 1:6552833‑M2/3‑1 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa > 1:1354698‑M2/47‑50 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa < 1:7729784‑M2/4‑1 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa < 1:6347785‑M2/4‑1 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa < 1:5426815‑M2/4‑1 (MQ=255) tcgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGaa > 1:3049543‑M2/47‑50 (MQ=255) cgatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc > 1:2155769‑M2/46‑50 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 1:5878951‑M2/6‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcg < 1:5021272‑M2/6‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:7007767‑M2/5‑1 (MQ=255) gatgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAc < 1:1621150‑M2/5‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc > 1:1126946‑M2/44‑50 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc < 1:5055185‑M2/7‑1 (MQ=255) atgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgc > 1:5028792‑M2/44‑50 (MQ=255) tgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg > 1:1948653‑M2/43‑50 (MQ=255) tgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg < 1:770853‑M2/8‑1 (MQ=255) tgccaaatgcgccaccctaaagcagcgcatccgcaatgatgtGGAAcgcg > 1:3868146‑M2/43‑50 (MQ=255) caaatgcgccaccctaaagcagtgcatccgcaatgatgtGGAACGCGCaa > 1:2013278‑M2/40‑50 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAAt > 1:2791036‑M2/38‑49 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATg < 1:8311680‑M2/13‑1 (MQ=255) aatgcgccaccctaaagcagcgcatccgcaatgatgaGGAACGCGCAAt > 1:5179017‑M2/38‑49 (MQ=255) atgcgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGa < 1:1533997‑M2/14‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa > 1:2872237‑M2/34‑50 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa < 1:7592223‑M2/17‑1 (MQ=255) cgccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGa > 1:4780964‑M2/34‑50 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat > 1:7920000‑M2/33‑50 (MQ=255) gccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGat < 1:8290187‑M2/18‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:8019872‑M2/19‑1 (MQ=255) ccaccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatc < 1:7834922‑M2/19‑1 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca < 1:8277396‑M2/20‑1 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca > 1:1357771‑M2/31‑50 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca < 1:1514322‑M2/20‑1 (MQ=255) caccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatca < 1:2369605‑M2/20‑1 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat > 1:5402635‑M2/30‑50 (MQ=255) accctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcat < 1:3974070‑M2/21‑1 (MQ=255) ccctaaagcggcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:5434631‑M2/22‑1 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:7281201‑M2/22‑1 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc > 1:466985‑M2/29‑50 (MQ=255) ccctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGatcatc < 1:3921238‑M2/22‑1 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcc < 1:6162890‑M2/23‑1 (MQ=255) cctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcc < 1:1047671‑M2/23‑1 (MQ=255) ctaaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatcca > 1:4325901‑M2/27‑50 (MQ=255) taaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccat > 1:5071934‑M2/26‑50 (MQ=255) aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc > 1:415397‑M2/25‑50 (MQ=255) aaagcagcgcatccgcaatgatgtGGAACGCGCAATGACGATcatccatc > 1:787227‑M2/25‑50 (MQ=255) aagcagcgcatccgcaatgatatGGAACGCGCAATGACGATcatccat < 1:4912548‑M2/25‑1 (MQ=255) gcagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctc < 1:1476087‑M2/29‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct < 1:6001481‑M2/30‑1 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:2279897‑M2/21‑50 (MQ=255) cagcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCctct > 1:1684174‑M2/21‑50 (MQ=255) agcgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTg < 1:7041408‑M2/31‑1 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:2294536‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:7257886‑M2/18‑50 (MQ=255) cgcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCt > 1:6241778‑M2/18‑50 (MQ=255) gcatccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCtt < 1:6419022‑M2/34‑1 (MQ=255) catccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTg < 1:2822688‑M2/35‑1 (MQ=255) atccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:4458392‑M2/15‑50 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:1504892‑M2/37‑1 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGcc < 1:8095417‑M2/37‑1 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:6298093‑M2/14‑49 (MQ=255) tccgcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGc > 1:5783789‑M2/14‑49 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagt < 1:1440810‑M2/40‑1 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCag > 1:7715990‑M2/11‑49 (MQ=255) gcaatgatgtGGAACGCGCAATGACGATCATCCATCCGCTGCTTGCCagt < 1:6110112‑M2/40‑1 (MQ=255) aatgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag < 1:3757985‑M2/42‑1 (MQ=255) atgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtagt < 1:2649570‑M2/43‑1 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:1435422‑M2/7‑48 (MQ=255) tgatgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCagtag > 1:2650760‑M2/7‑48 (MQ=255) atgtGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAgc > 1:5311351‑M2/5‑50 (MQ=255) tGGGACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCa > 1:5085647‑M2/2‑50 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:7944111/1‑50 (MQ=255) ggAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAc > 1:4962180/1‑50 (MQ=255) | TTTGAACAGGCGCTGGAAGCACTGGCTGAAAGCATGGGTATTGGTTGAGGAACGCGCAATGACGATCATCCATCCTCTGCTTGCCAGTAGTAGCGCAC > NC_000913/549569‑549666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |