Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 2,756,160 Δ35,091 bp [intA]–[lhgO] 33 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 2756160 2791250 35091 87 [0] [0] 92 [intA]–[lhgO] [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 27561590 (0.000)86 (0.810) 43/96 0.3 100% coding (1/1242 nt) intA CP4‑57 prophage; integrase
?NC_000913 2791251 = 0 (0.000)intergenic (+1/‑22) lhgO/gabD L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase

CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756111‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299
                                                                                                  
CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC                                                 >  1:7603324/1‑50
CGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACC                                                 <  1:6983719/50‑1
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                >  1:6115511/1‑50
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                >  1:433862/1‑50
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                <  1:4166695/50‑1
 GAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCT                                                <  1:1634686/50‑1
  AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT                                               <  1:632498/50‑1
  AAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTT                                               <  1:2134830/50‑1
   AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:984895/50‑1
   AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:8088846/50‑1
   AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:7311603/50‑1
   AAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTT                                              <  1:141186/50‑1
     AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA                                            <  1:135773/50‑1
     AGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA                                            <  1:2573746/50‑1
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:5931158/50‑1
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:8019138/50‑1
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:6955941/50‑1
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAA                                           <  1:4041770/50‑1
      GCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGA                                            >  1:1918153/1‑49
       CTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAA                                          <  1:4288086/50‑1
         CTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA                                         >  1:1027785/1‑49
          TATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAA                                         >  1:2261623/1‑48
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG                                     <  1:4762712/50‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG                                     <  1:3357608/50‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGG                                     <  1:5277249/50‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      <  1:3509024/49‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      >  1:3911883/1‑49
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      >  1:3771193/1‑49
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAG                                      <  1:7358417/49‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA                                       <  1:6082296/48‑1
            TTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACA                                       <  1:4897551/48‑1
              GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA                                    <  1:2257016/49‑1
              GTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGA                                    <  1:2200188/49‑1
               TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATG                                  <  1:1616375/50‑1
               TTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGAT                                   <  1:5762847/49‑1
                 TACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGT                                 <  1:6180721/49‑1
                  ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:459830/49‑1
                  ACGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTA                                <  1:1592730/49‑1
                   CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC                              <  1:6625171/50‑1
                   CGTTGGG‑CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGC                              <  1:2492498/50‑1
                         ggCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGA                         <  1:6637747/48‑1
                          gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:7822198/49‑1
                          gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:4725263/49‑1
                          gCTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAA                        <  1:8318758/49‑1
                           CTAAACGCAGGGAGACTCCCCTCCTTTGAAAACAGGATGTAGCTATGAAA                       <  1:7873036/50‑1
                           CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA                       <  1:2063720/50‑1
                           CTAAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAA                       <  1:4485771/50‑1
                           CTAAACGCAGGGAGACTCCCCACCCTTGAAAACAGGATGTAGCGATGAAA                       <  1:7087360/50‑1
                             AAACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACT                     >  1:4963167/1‑50
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:1972696/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:6124866/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTT                    <  1:2752430/50‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC                      <  1:6739073/48‑1
                              AACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAAC                      <  1:3475235/48‑1
                               ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:7754141/50‑1
                               ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:4929776/50‑1
                               ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:1666267/50‑1
                               ACGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTA                   <  1:1529753/50‑1
                                CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA                  <  1:1976222/50‑1
                                CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA                  <  1:4310731/50‑1
                                CGCAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAA                  <  1:8135308/50‑1
                                  CAGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACG                <  1:1375657/50‑1
                                   AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               <  1:2568476/50‑1
                                   AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               <  1:7135353/50‑1
                                   AGGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               <  1:1175240/50‑1
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC              <  1:1970455/50‑1
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC              <  1:4283523/50‑1
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGAC              <  1:6954939/50‑1
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               >  1:2482438/1‑49
                                    GGGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGA               >  1:1616706/1‑49
                                     GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA             <  1:5722329/50‑1
                                     GGAGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACA             <  1:5688137/50‑1
                                       AGACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAG            >  1:6632321/1‑49
                                        GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA          <  1:7494475/50‑1
                                        GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTA          <  1:4019518/50‑1
                                        GACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGT           >  1:5989108/1‑49
                                         ACTCCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAA         <  1:2116349/50‑1
                                            CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT       >  1:502435/1‑49
                                            CCCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT       >  1:1874843/1‑49
                                             CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA     <  1:1171287/50‑1
                                             CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTA     <  1:4124073/50‑1
                                             CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTT      <  1:5708269/49‑1
                                             CCCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACT       <  1:7920766/48‑1
                                              CCACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTAT    <  1:1731663/50‑1
                                               CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT   <  1:7518270/50‑1
                                               CACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATT   <  1:1487120/50‑1
                                                ACCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  <  1:2948057/50‑1
                                                                                                  
CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2756111‑2756159
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCCTTTGAAAACAGGATGTAGCGATGAAACTTAACGACAGTAACTTATTC  >  NC_000913/2791251‑2791299

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.