| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,756,160 | Δ35,091 bp | [intA]–[lhgO] | 33 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjV, yfjW, ypjI, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, pinH, ypjB, ypjC, ileY, ygaQ, csiD, [lhgO] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2756160 | 2791250 | 35091 | 87 [0] | [0] 92 | [intA]–[lhgO] | [intA],yfjH,alpA,yfjI,yfjJ,abpB,abpA,yfjM,rnlA,rnlB,yfjP,yfjQ,yfjR,ypjK,yfjS,yfjT,yfjU,yfjV,yfjW,ypjI,yfjX,yfjY,ypjJ,yfjZ,ypjF,ypjA,pinH,ypjB,ypjC,ileY,ygaQ,csiD,[lhgO] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2756159 | 0 (0.000) | 86 (0.810) | 43/96 | 0.3 | 100% | coding (1/1242 nt) | intA | CP4‑57 prophage; integrase |
| ? | NC_000913 | 2791251 = | 0 (0.000) | intergenic (+1/‑22) | lhgO/gabD | L‑2‑hydroxyglutarate oxidase/NADP(+)‑dependent succinate‑semialdehyde dehydrogenase | |||||
CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756111‑2756208 | cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc > 1:7603324‑M1/1‑48 (MQ=255)cGAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcc < 1:6983719‑M1/50‑3 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:6115511‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct > 1:433862‑M1/1‑47 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:4166695‑M1/50‑4 (MQ=255) gAAAAGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcct < 1:1634686‑M1/50‑4 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:632498‑M1/50‑5 (MQ=255) aaaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctt < 1:2134830‑M1/50‑5 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:984895‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:8088846‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:7311603‑M1/50‑6 (MQ=255) aaaGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAccttt < 1:141186‑M1/50‑6 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:135773‑M1/50‑8 (MQ=255) aGCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga < 1:2573746‑M1/50‑8 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:5931158‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:8019138‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:6955941‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaa < 1:4041770‑M1/50‑9 (MQ=255) gCTCTATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttga > 1:1918153‑M1/1‑42 (MQ=255) ctctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaa < 1:4288086‑M1/50‑10 (MQ=255) ctATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:1027785‑M1/1‑39 (MQ=255) tATTGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaa > 1:2261623‑M1/1‑38 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:4762712‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:3357608‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagg < 1:5277249‑M1/50‑15 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:3509024‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:3911883‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag > 1:3771193‑M1/1‑36 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacag < 1:7358417‑M1/49‑14 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:6082296‑M1/48‑13 (MQ=255) ttGTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaaca < 1:4897551‑M1/48‑13 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga < 1:2257016‑M1/49‑16 (MQ=255) gTTTACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacagga < 1:2200188‑M1/49‑16 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatg < 1:1616375‑M1/50‑18 (MQ=255) tttACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggat < 1:5762847‑M1/49‑17 (MQ=255) tACGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgt < 1:6180721‑M1/49‑19 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:459830‑M1/49‑20 (MQ=255) aCGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgta < 1:1592730‑M1/49‑20 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:6625171‑M1/50‑22 (MQ=255) cGTTGGG‑CTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagc < 1:2492498‑M1/50‑22 (MQ=255) ggctaAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatga < 1:6637747‑M1/48‑27 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:7822198‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:4725263‑M1/49‑28 (MQ=255) gctAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaa < 1:8318758‑M1/49‑28 (MQ=255) cTAAACGCAGGGAGACTCCCCTcctttgaaaacaggatgtagctatgaaa < 1:7873036‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:2063720‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaa < 1:4485771‑M1/50‑29 (MQ=255) cTAAACGCAGGGAGACTCCCCAcccttgaaaacaggatgtagcgatgaaa < 1:7087360‑M1/50‑29 (MQ=255) aaaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaact > 1:4963167‑M1/1‑20 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:1972696‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:6124866‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactt < 1:2752430‑M1/50‑32 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:6739073‑M1/48‑30 (MQ=255) aaCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaac < 1:3475235‑M1/48‑30 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:7754141‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:4929776‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:1666267‑M1/50‑33 (MQ=255) aCGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaactta < 1:1529753‑M1/50‑33 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:1976222‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:4310731‑M1/50‑34 (MQ=255) cGCAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaa < 1:8135308‑M1/50‑34 (MQ=255) cAGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacg < 1:1375657‑M1/50‑36 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:2568476‑M1/50‑37 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:7135353‑M1/50‑37 (MQ=255) aGGGAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga < 1:1175240‑M1/50‑37 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:1970455‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:4283523‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgac < 1:6954939‑M1/50‑38 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:2482438‑M1/1‑13 (MQ=255) gggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacga > 1:1616706‑M1/1‑13 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgaca < 1:5722329‑M1/50‑39 (MQ=255) ggAGACTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgaca < 1:5688137‑M1/50‑39 (MQ=255) agaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacag > 1:6632321‑M1/1‑10 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:7494475‑M1/50‑42 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagta < 1:4019518‑M1/50‑42 (MQ=255) gaCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagt > 1:5989108‑M1/1‑9 (MQ=255) aCTCCCCAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaa < 1:2116349‑M1/50‑43 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:502435‑M1/1‑5 (MQ=255) ccccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact > 1:1874843‑M1/1‑5 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:1171287‑M1/50‑47 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactta < 1:4124073‑M1/50‑47 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaactt < 1:5708269‑M1/49‑46 (MQ=255) cccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaact < 1:7920766‑M1/48‑45 (MQ=255) ccAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttat < 1:1731663‑M1/50‑48 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:7518270‑M1/50‑49 (MQ=255) cAcctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttatt < 1:1487120‑M1/50‑49 (MQ=255) acctttgaaaacaggatgtagcgatgaaacttaacgacagtaacttattc < 1:2948057‑M1/50‑50 (MQ=255) | CGAAAAGCTCTATTGTTTACGTTGGGCCTAAACGCAGGGAGACTCCCCATGGCAAGAAAAACCAAGCCGTTAACTGATACGGAAATCAAAGCCGCCAA > NC_000913/2756111‑2756208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |