| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 134 [0] | [0] 132 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 126 (1.240) | 64/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 136 total aligned reads displayed.
CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 AGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACA > 1:1862889/1‑50 GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:5800141/50‑1 GTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:4143701/1‑50 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT < 1:6118948/50‑1 TGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTA > 1:7562174/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:7435660/1‑49 GACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTAT > 1:7304795/1‑49 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:1073963/1‑50 ACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAA > 1:4309739/1‑50 CCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAAT > 1:4729867/1‑50 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:6836923/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:5956626/50‑1 CTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATC < 1:490434/50‑1 TGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC > 1:7149751/1‑50 GTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC > 1:832629/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:3305667/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:5636032/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCT > 1:4748923/1‑50 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC < 1:7921960/49‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCC < 1:5049815/49‑1 TTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCC < 1:6502316/48‑1 TTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT > 1:1578748/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:5443980/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG > 1:4052595/1‑50 TCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTT < 1:7053487/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:4574617/49‑1 CTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTG < 1:6819861/49‑1 TTCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGA > 1:1096153/1‑50 TCTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGT < 1:4519078/47‑1 CTGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGAC < 1:7561302/49‑1 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:2180644/1‑49 TGCTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACG > 1:5018877/1‑49 CTCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTA < 1:5274428/49‑1 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:6123772/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:7630968/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:157419/1‑49 TCACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAA > 1:6689169/1‑49 CACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA > 1:2901826/1‑49 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA < 1:3688228/50‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA < 1:6527222/50‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAA > 1:4630906/1‑50 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:7484900/48‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:7678853/48‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:4178717/48‑1 ACGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAA < 1:2044814/48‑1 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:1751978/1‑50 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC > 1:7997229/1‑50 CGCGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAAC < 1:5162217/50‑1 CGCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:5128803/1‑50 GCGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTG > 1:2711797/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA < 1:6937474/50‑1 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:5033752/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:2989290/1‑49 CGGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGC > 1:5995991/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:2859532/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:1560003/1‑49 GGCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCA > 1:241724/1‑49 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAA < 1:3136555/50‑1 GCGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAA > 1:7484220/1‑49 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:6216476/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:1126448/1‑50 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:538598/50‑1 CGATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA < 1:4316430/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:5791893/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC < 1:1708163/50‑1 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:5403021/1‑49 GATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:3258616/1‑49 GATATAAAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAA > 1:7955849/1‑49 ATATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAAC > 1:6386980/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:5566914/1‑49 ATAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:4564937/1‑49 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAA < 1:7296243/50‑1 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:1645552/1‑48 TAGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAA > 1:4026798/1‑48 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:2803784/1‑50 AGAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG > 1:7119962/1‑50 GAATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAG < 1:3298973/49‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC < 1:2151782/50‑1 AATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTC > 1:2492052/1‑50 ATTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCC < 1:515366/50‑1 TTCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCT < 1:5656170/50‑1 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:4115783/1‑50 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:71017/1‑50 TCAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA > 1:8166432/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:4048722/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:8270236/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC > 1:1987675/1‑50 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:5328233/49‑1 CAAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTA < 1:3642349/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:3750150/1‑50 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:311966/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:4829954/49‑1 AAACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTAC < 1:6713721/49‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:7899911/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGC < 1:5916210/50‑1 AACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACG > 1:5293263/1‑49 ACATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCA < 1:6558520/50‑1 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG < 1:6619385/50‑1 CATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAG > 1:2364492/1‑50 ATTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGG < 1:2721551/50‑1 CAGGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3453876‑3453927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catTATAATCCCTTGTGACGTAAAAACTGCAAAACAAAAGTCCTACGCAGGA > NC_000913/3469854‑3469902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |