| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,453,928 | Δ15,926 bp | gspA–[chiA] | 16 genes gspA, gspC, gspD, gspE, gspF, gspG, gspH, gspI, gspJ, gspK, gspL, gspM, gspO, bfr, bfd, [chiA] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3453928 | 3469853 | 15926 | 134 [0] | [0] 132 | gspA–[chiA] | gspA,gspC,gspD,gspE,gspF,gspG,gspH,gspI,gspJ,gspK,gspL,gspM,gspO,bfr,bfd,[chiA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3453927 | 0 (0.000) | 126 (1.240) | 64/92 | 0.0 | 100% | coding (1/420 nt) | gspB | putative general secretion pathway protein B |
| ? | NC_000913 | 3469854 = | 0 (0.000) | intergenic (‑1/+291) | chiA/tufA | endochitinase/translation elongation factor Tu 1 | |||||
Only 100 of 134 total aligned reads displayed.
GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 | gggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT < 1:5800141‑M1/50‑1 (MQ=255) ggTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACAT > 1:2548759‑M1/1‑49 (MQ=255) gTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:4143701‑M1/1‑48 (MQ=255) tGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATta > 1:7562174‑M1/1‑47 (MQ=255) gACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtat > 1:7304795‑M1/1‑46 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:1073963‑M1/1‑45 (MQ=255) aCCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataa > 1:4309739‑M1/1‑45 (MQ=255) ccTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataat > 1:4729867‑M1/1‑44 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatc < 1:6836923‑M1/50‑8 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatc < 1:5956626‑M1/50‑8 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatc < 1:2109842‑M1/50‑8 (MQ=255) cTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatc < 1:490434‑M1/50‑8 (MQ=255) gTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc > 1:832629‑M1/1‑41 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:5636032‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccct > 1:4748923‑M1/1‑40 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc < 1:5049815‑M1/49‑10 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatccc < 1:7921960‑M1/49‑10 (MQ=255) tttctttcTGCTCACGCGCGGCGATATAGAATTCAAACATtataatcc < 1:6502316‑M1/48‑9 (MQ=255) ttctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatccctt > 1:1578748‑M1/1‑39 (MQ=255) tctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg > 1:5443980‑M1/1‑38 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:2188202‑M1/49‑13 (MQ=255) ctttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttg < 1:4574617‑M1/49‑13 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:1096153‑M1/1‑35 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:4226756‑M1/1‑35 (MQ=255) ttctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga > 1:4079945‑M1/1‑35 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtga < 1:3517139‑M1/49‑16 (MQ=255) tctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgt < 1:4519078‑M1/47‑14 (MQ=255) ctGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgac < 1:7561302‑M1/49‑17 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:5018877‑M1/1‑32 (MQ=255) tGCTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacg > 1:2180644‑M1/1‑32 (MQ=255) cTCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgta < 1:5274428‑M1/49‑20 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:7630968‑M1/1‑29 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:6123772‑M1/1‑29 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:157419‑M1/1‑29 (MQ=255) tCACGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaa > 1:6689169‑M1/1‑29 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:3688228‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa < 1:6527222‑M1/50‑24 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaa > 1:4630906‑M1/1‑27 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:7678853‑M1/48‑22 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:7484900‑M1/48‑22 (MQ=255) aCGCGCGGCGATATAGAATTCAAACATtataatcccttgtgacgtaaa < 1:2044814‑M1/48‑22 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac > 1:7997229‑M1/1‑26 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac > 1:1751978‑M1/1‑26 (MQ=255) cgcgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaac < 1:5162217‑M1/50‑25 (MQ=255) cgcgGCGATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:5128803‑M1/1‑24 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:7187158‑M1/1‑23 (MQ=255) gcggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactg > 1:2711797‑M1/1‑23 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca < 1:6937474‑M1/50‑29 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:5033752‑M1/1‑22 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:2989290‑M1/1‑22 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:323601‑M1/1‑22 (MQ=255) cggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgc > 1:5995991‑M1/1‑22 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:2859532‑M1/1‑21 (MQ=255) ggcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgca > 1:1560003‑M1/1‑21 (MQ=255) gcgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaa > 1:7484220‑M1/1‑20 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:4316430‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:63565‑M1/1‑19 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:538598‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa < 1:6216476‑M1/50‑32 (MQ=255) cgATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:1126448‑M1/1‑19 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:1708163‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac < 1:5791893‑M1/50‑33 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:3258616‑M1/1‑18 (MQ=255) gATATAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:5403021‑M1/1‑18 (MQ=255) gATATAAAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaa > 1:7955849‑M1/1‑18 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaaca < 1:682232‑M1/50‑34 (MQ=255) atatAGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaac > 1:3903186‑M1/1‑17 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:5566914‑M1/1‑15 (MQ=255) ataGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:4564937‑M1/1‑15 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaa < 1:7296243‑M1/50‑37 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:4026798‑M1/1‑14 (MQ=255) taGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaa > 1:1645552‑M1/1‑14 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:7119962‑M1/1‑13 (MQ=255) aGAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag > 1:2803784‑M1/1‑13 (MQ=255) gAATTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaag < 1:3298973‑M1/49‑38 (MQ=255) aaTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtc > 1:2492052‑M1/1‑11 (MQ=255) aTTCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcc < 1:515366‑M1/50‑41 (MQ=255) ttCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcct < 1:5656170‑M1/50‑42 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:5886089‑M1/1‑8 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:71017‑M1/1‑8 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:8166432‑M1/1‑8 (MQ=255) tCAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta > 1:4115783‑M1/1‑8 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:8270236‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:1987675‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac > 1:4048722‑M1/1‑7 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:3642349‑M1/49‑43 (MQ=255) cAAACATtataatcccttgtgacgtaaaaactgcaaaacaaaagtccta < 1:5328233‑M1/49‑43 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg < 1:6001348‑M1/50‑45 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:3035487‑M1/1‑6 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:311966‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:4829954‑M1/49‑44 (MQ=255) aaaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctac < 1:6713721‑M1/49‑44 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgc < 1:7899911‑M1/50‑46 (MQ=255) aaCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:5293263‑M1/1‑5 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgca < 1:6543290‑M1/50‑47 (MQ=255) aCATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacg > 1:7086834‑M1/1‑4 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag > 1:2364492‑M1/1‑3 (MQ=255) cATtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcag < 1:6619385‑M1/50‑48 (MQ=255) aTtataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagg < 1:2815741‑M1/50‑49 (MQ=255) ttataatcccttgtgacgtaaaaactgcaaaacaaaagtcctacgcagga < 1:74369‑M1/50‑50 (MQ=255) | GGGTGACCTGTTTCTTTCTGCTCACGCGCGGCGATATAGAATTCAAACATGTCATTTCCCCTTCACTGTTGTTTCCGGGGAAATATTTGCTTCATCCCG > NC_000913/3453878‑3453976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |