| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 163 [0] | [0] 166 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 159 (1.500) | 70/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 163 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:285980/50‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAG < 1:275784/50‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:5984988/49‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:6285096/49‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:5155127/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:6415478/50‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:922093/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 1:7248333/49‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAA < 1:3087253/49‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:4527262/50‑1 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:8176183/1‑49 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:3035621/1‑49 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:72987/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:3492778/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:418934/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1519231/49‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1773507/49‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:2225223/49‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:6184366/49‑1 TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:7893059/1‑49 TTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:7928057/1‑49 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:2343804/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCAC < 1:8085067/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:7071942/1‑48 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:2522887/1‑50 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:637416/1‑50 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG > 1:1119944/1‑50 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:3174140/49‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGG < 1:8005330/50‑1 CGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAG < 1:6927482/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:5374856/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:6997966/50‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:7217262/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:272557/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:2596800/50‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:2985847/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACAT < 1:3999333/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG > 1:3135277/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:3387119/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:352188/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:2528123/50‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC < 1:7808702/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:517879/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:2779828/1‑49 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:5825994/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:4840596/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA > 1:135720/1‑50 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:1413317/49‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTA < 1:5527689/49‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 1:8278828/1‑50 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT > 1:1309791/1‑50 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:7574838/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC < 1:8034033/50‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:7256760/49‑1 TTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT > 1:1022350/1‑50 TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:3997399/1‑50 TGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG > 1:1323690/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:3750530/49‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:5271890/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:522264/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:23557/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:6869532/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:4606515/1‑49 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:4170938/1‑49 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:6557732/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:4064503/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:2254191/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:5224105/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:2075352/49‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:3526328/50‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:5735324/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA > 1:3400395/1‑50 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:5257322/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA > 1:6300037/1‑50 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:7186989/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:5074375/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:3794084/1‑50 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:4487488/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:5867621/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:7299212/1‑49 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:10671/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:925605/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:2189772/50‑1 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:7420049/50‑1 GGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACC > 1:5586954/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACat < 1:6785118/50‑3 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:1462548/1‑50 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:6433070/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:8132614/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:292857/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:3975800/1‑49 ATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG > 1:258358/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:977134/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:1659587/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:7702460/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:5905360/1‑50 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:475113/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:4797949/1‑49 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:6680599/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:1202082/50‑1 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |