| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 163 [0] | [0] 166 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 159 (1.500) | 70/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 163 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGCA > NC_000913/4496627‑4496724 | aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg < 1:285980‑M1/50‑2 (MQ=255)aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAg < 1:275784‑M1/50‑2 (MQ=255)aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:5984988‑M1/49‑1 (MQ=255)aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:6285096‑M1/49‑1 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:5155127‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:6415478‑M1/50‑3 (MQ=255) tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga < 1:922093‑M1/50‑3 (MQ=255) gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaa < 1:7248333‑M1/49‑4 (MQ=255) gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaa < 1:3087253‑M1/49‑4 (MQ=255) tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat < 1:4527262‑M1/50‑6 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:8176183‑M1/1‑44 (MQ=255) aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat > 1:3035621‑M1/1‑44 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca < 1:72987‑M1/50‑8 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca < 1:3492778‑M1/50‑8 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca < 1:418934‑M1/50‑8 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:1519231‑M1/49‑7 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:1773507‑M1/49‑7 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:2225223‑M1/49‑7 (MQ=255) tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc < 1:6184366‑M1/49‑7 (MQ=255) ttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:7893059‑M1/1‑42 (MQ=255) ttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:7928057‑M1/1‑42 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcac < 1:2343804‑M1/49‑9 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcac < 1:8085067‑M1/49‑9 (MQ=255) tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca > 1:7071942‑M1/1‑41 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:2522887‑M1/1‑40 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:637416‑M1/1‑40 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag > 1:1119944‑M1/1‑40 (MQ=255) ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcaca < 1:3174140‑M1/49‑10 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagg < 1:8005330‑M1/50‑12 (MQ=255) cGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacag < 1:6927482‑M1/49‑11 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga > 1:5374856‑M1/1‑38 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:6997966‑M1/50‑13 (MQ=255) ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga < 1:7217262‑M1/50‑13 (MQ=255) gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggac < 1:272557‑M1/50‑14 (MQ=255) gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggac < 1:2596800‑M1/50‑14 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt > 1:2985847‑M1/1‑34 (MQ=255) cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacat < 1:3999333‑M1/49‑16 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg > 1:3135277‑M1/1‑33 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:3387119‑M1/49‑17 (MQ=255) gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt < 1:352188‑M1/49‑17 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc < 1:2528123‑M1/50‑19 (MQ=255) aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc < 1:7808702‑M1/50‑19 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct < 1:517879‑M1/50‑20 (MQ=255) tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc > 1:2779828‑M1/1‑31 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa < 1:5825994‑M1/50‑22 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa < 1:4840596‑M1/50‑22 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa > 1:135720‑M1/1‑29 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:1413317‑M1/49‑21 (MQ=255) aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgcta < 1:5527689‑M1/49‑21 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat > 1:8278828‑M1/1‑28 (MQ=255) tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat > 1:1309791‑M1/1‑28 (MQ=255) gCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg > 1:7574838‑M1/1‑27 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc < 1:8034033‑M1/50‑25 (MQ=255) cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg < 1:7256760‑M1/49‑24 (MQ=255) ttGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct > 1:1022350‑M1/1‑25 (MQ=255) tGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg > 1:3997399‑M1/1‑24 (MQ=255) tGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg > 1:1323690‑M1/1‑24 (MQ=255) gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg < 1:3750530‑M1/49‑27 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt < 1:5271890‑M1/50‑29 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt < 1:522264‑M1/50‑29 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt < 1:23557‑M1/50‑29 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt < 1:6869532‑M1/50‑29 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:4606515‑M1/1‑22 (MQ=255) tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg > 1:4170938‑M1/1‑22 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:6557732‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac < 1:4064503‑M1/50‑31 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac > 1:2254191‑M1/1‑20 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta < 1:5224105‑M1/49‑30 (MQ=255) ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta < 1:2075352‑M1/49‑30 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca < 1:3526328‑M1/50‑34 (MQ=255) aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca < 1:5735324‑M1/50‑34 (MQ=255) cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa > 1:3400395‑M1/1‑16 (MQ=255) agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat < 1:5257322‑M1/50‑36 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata > 1:6300037‑M1/1‑14 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata < 1:7186989‑M1/50‑37 (MQ=255) gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata < 1:5074375‑M1/50‑37 (MQ=255) ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:3794084‑M1/1‑13 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt < 1:4487488‑M1/50‑39 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt < 1:5867621‑M1/50‑39 (MQ=255) gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat > 1:7299212‑M1/1‑12 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:10671‑M1/50‑40 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:925605‑M1/50‑40 (MQ=255) agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta < 1:2189772‑M1/50‑40 (MQ=255) gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac < 1:7420049‑M1/50‑41 (MQ=255) ggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacc > 1:5586954‑M1/1‑9 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:1462548‑M1/1‑8 (MQ=255) gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacat < 1:6785118‑M1/50‑43 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:6433070‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg < 1:8132614‑M1/50‑44 (MQ=255) aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacct > 1:292857‑M1/1‑7 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:3975800‑M1/1‑6 (MQ=255) aTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg > 1:258358‑M1/1‑6 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:977134‑M1/50‑46 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:1659587‑M1/50‑46 (MQ=255) tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa < 1:7702460‑M1/50‑46 (MQ=255) cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:5905360‑M1/1‑3 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct < 1:475113‑M1/50‑49 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:4797949‑M1/1‑2 (MQ=255) gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc > 1:6680599‑M1/1‑2 (MQ=255) agaaatcacaggacattgctaatgctggtacgcaatattacctgaagcta < 1:1202082‑M1/50‑50 (MQ=255) | ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGCA > NC_000913/4496627‑4496724 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |