| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 765,208 | Δ5,405 bp | [mngR]–mngB | [mngR], mngA, mngB | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 765208 | 770612 | 5405 | 132 [0] | [0] 125 | [mngR]–mngB | [mngR],mngA,mngB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 765207 | 0 (0.000) | 122 (1.150) | 63/96 | 0.0 | 100% | coding (669/723 nt) | mngR | DNA‑binding transcriptional repressor MngR |
| ? | NC_000913 | 770613 = | 0 (0.000) | intergenic (+2/‑845) | mngB/cydA | alpha‑mannosidase/cytochrome bd‑I ubiquinol oxidase subunit I | |||||
Only 100 of 132 total aligned reads displayed.
CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCC > NC_000913/765157‑765254 | cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1277683‑M1/1‑50 (MQ=255)cgcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:2802419‑M1/1‑50 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAt < 1:4105952‑M1/50‑2 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:4752444‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:1150823‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:5152450‑M1/1‑49 (MQ=255) gcgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:7258101‑M1/1‑49 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAta < 1:1432516‑M1/50‑3 (MQ=255) cgATGATTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTA > 1:8065779‑M1/1‑48 (MQ=255) gatgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:5599333‑M1/1‑47 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1091965‑M1/1‑46 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:3388542‑M1/1‑46 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:6654849‑M1/1‑46 (MQ=255) atgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtag > 1:1730617‑M1/1‑46 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagca < 1:7946373‑M1/50‑6 (MQ=255) tgatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagc > 1:5391698‑M1/1‑45 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:1282079‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:6258865‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:2645058‑M1/1‑44 (MQ=255) gatTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa > 1:4935964‑M1/1‑44 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:7501849‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:5450991‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:2499278‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:2634329‑M1/1‑43 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:6915294‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat < 1:288815‑M1/50‑8 (MQ=255) atTTTCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaa < 1:3739170‑M1/49‑7 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:4703522‑M1/1‑42 (MQ=255) ttttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaat > 1:8289574‑M1/1‑42 (MQ=255) tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:1765769‑M1/1‑41 (MQ=255) tttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatc > 1:1970912‑M1/1‑41 (MQ=255) ttCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatca < 1:6164545‑M1/49‑10 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:170887‑M1/49‑11 (MQ=255) tCGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaa < 1:198449‑M1/49‑11 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac > 1:2111483‑M1/1‑38 (MQ=255) cGCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaa < 1:2265098‑M1/49‑12 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:1820329‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:8165778‑M1/1‑37 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc < 1:1846628‑M1/50‑14 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaac < 1:4986326‑M1/49‑13 (MQ=255) gCTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagaatcaaacc > 1:6338552‑M1/1‑37 (MQ=255) cTGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaacc > 1:3259134‑M1/1‑36 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:7190550‑M1/1‑35 (MQ=255) tGCGCTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccg > 1:5892470‑M1/1‑35 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:6634625‑M1/1‑33 (MQ=255) cgcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaag > 1:314575‑M1/1‑33 (MQ=255) gcTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:8269439‑M1/1‑32 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:3936544‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:3394603‑M1/1‑31 (MQ=255) cTATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagc > 1:7920254‑M1/1‑31 (MQ=255) tATCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca > 1:2699841‑M1/1‑30 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaacccgaagccaca < 1:2331698‑M1/50‑23 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:112578‑M1/1‑28 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:7177220‑M1/48‑21 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:7323735‑M1/48‑21 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagcca < 1:7949737‑M1/48‑21 (MQ=255) tCAGGGTAAA‑TTATAGTCATCGGTATTAaagcaatcaaaccgaagccac < 1:5936226‑M1/49‑22 (MQ=255) cAGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccaca > 1:3873773‑M1/1‑27 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacata < 1:1276909‑M1/50‑25 (MQ=255) aGGGTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacat < 1:5799005‑M1/49‑24 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:2941555‑M1/50‑26 (MQ=255) gggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatat < 1:6043146‑M1/50‑26 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg > 1:7037568‑M1/1‑24 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:4258264‑M1/50‑27 (MQ=255) ggTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatg < 1:3986854‑M1/50‑27 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:5353841‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:8147251‑M1/50‑28 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc > 1:3057335‑M1/1‑23 (MQ=255) gTAAA‑TTATAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgc < 1:7272539‑M1/50‑28 (MQ=255) attaTATTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:5621340‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:3951591‑M1/2‑19 (MQ=255) attaTAGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcgg > 1:8166808‑M1/2‑19 (MQ=255) ataGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:7929912‑M1/1‑16 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccag < 1:185039‑M1/50‑36 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggcca < 1:5445933‑M1/49‑35 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2025356‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:5665682‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:6634732‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:5224550‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:1435434‑M1/1‑15 (MQ=255) taGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:4369824‑M1/1‑15 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:4792777‑M1/1‑14 (MQ=255) aGTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggc > 1:2613103‑M1/1‑14 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat > 1:2870742‑M1/1‑13 (MQ=255) gTCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagat < 1:4344065‑M1/50‑38 (MQ=255) tCATCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagatt < 1:3439442‑M1/50‑39 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt < 1:322606‑M1/50‑41 (MQ=255) aTCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgt > 1:133543‑M1/1‑10 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:2187234‑M1/1‑9 (MQ=255) tCGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt < 1:4742803‑M1/50‑42 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:3028821‑M1/1‑8 (MQ=255) cGGTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgtt > 1:6003590‑M1/1‑8 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga < 1:7144302‑M1/50‑44 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:7070398‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:6540833‑M1/1‑7 (MQ=255) ggTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttg < 1:905821‑M1/49‑43 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:5594732‑M1/1‑6 (MQ=255) gTATTAtagcaatcaaaccgaagccacatatgcgcggccagattgttga > 1:5489318‑M1/1‑6 (MQ=255) tattatagcaatcaaaccgaagccacatatgcgcggccagattgttgac > 1:2467‑M1/1‑5 (MQ=255) ttatagcaatcaaaccgaagccacatatgcgcggccagattgttgacaaa < 1:1247946‑M1/50‑48 (MQ=255) | CGCGATGATTTTCGCTGCGCTATCAGGGTAAATTTATAGTCATCGGTATTAAAAGCGTTGCGGCTATATTCAAACACCCGACCATCAACTAAATATCC > NC_000913/765157‑765254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |