| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 114 [0] | [0] 114 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 111 (1.030) | 63/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 114 total aligned reads displayed.
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 | acaGAATTTGCCCGCAGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:4725306/47‑1 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:6689243/49‑1 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCtgcagtg < 1:5486589/49‑1 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:3461147‑M1/1‑49 (MQ=255)aaaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt > 1:5071840‑M1/1‑49 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGtt > 1:4143340‑M1/1‑48 (MQ=255) aaGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGt < 1:8130804‑M1/49‑2 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc > 1:4398798‑M1/1‑47 (MQ=255) aGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttc < 1:6340181‑M1/50‑4 (MQ=255) gAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcg > 1:4182102‑M1/1‑46 (MQ=255) aaTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgc > 1:2569868‑M1/1‑45 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:5618468‑M1/50‑7 (MQ=255) aTTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgct < 1:2141412‑M1/50‑7 (MQ=255) gCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgcttta > 1:3374625‑M1/1‑40 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaa < 1:7216632‑M1/50‑12 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:6743635‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa < 1:3881489‑M1/49‑11 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:6144578‑M1/1‑39 (MQ=255) cccGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaa > 1:188551‑M1/1‑39 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:6309300‑M1/1‑38 (MQ=255) ccgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa < 1:3659726‑M1/50‑13 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaac < 1:3623325‑M1/50‑14 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:7799486‑M1/1‑37 (MQ=255) cgccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaa > 1:408972‑M1/1‑37 (MQ=255) gccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:1267075‑M1/1‑36 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacat < 1:6626175‑M1/50‑16 (MQ=255) ccgGACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaaca > 1:3940926‑M1/1‑35 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:703026‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:5135888‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:1808443‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:8257553‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:7598192‑M1/1‑33 (MQ=255) ggACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:6710844‑M1/1‑33 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:6721724‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatc < 1:3112389‑M1/50‑19 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:6681056‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:7278398‑M1/1‑32 (MQ=255) gACGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatat > 1:815646‑M1/1‑32 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:1991253‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:2149492‑M1/1‑31 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca < 1:3484602‑M1/50‑20 (MQ=255) aCGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatca > 1:849931‑M1/1‑31 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:7096595‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat < 1:513557‑M1/50‑21 (MQ=255) cGGTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:6284003‑M1/1‑30 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:1419985‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatg < 1:4204031‑M1/50‑22 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:874071‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:135119‑M1/1‑29 (MQ=255) ggTGTAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcat > 1:3719161‑M1/1‑29 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:3274991‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:4680715‑M1/50‑23 (MQ=255) gtgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatga < 1:1279069‑M1/50‑23 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:4735557‑M1/50‑24 (MQ=255) tgtAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaa < 1:1334988‑M1/50‑24 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac > 1:2425656‑M1/1‑25 (MQ=255) tAACAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaac < 1:7942974‑M1/50‑26 (MQ=255) aaCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact > 1:1398677‑M1/1‑24 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:3552415‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactg < 1:5349938‑M1/50‑28 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:2954623‑M1/49‑27 (MQ=255) aCAATGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaact < 1:5302188‑M1/49‑27 (MQ=255) aCAATGCATTCCGGCCTGCAGAGttcgctttaaaacatatcatgaaactg > 1:6008093‑M1/1‑23 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:6974438‑M1/1‑21 (MQ=255) aaTGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactggg > 1:18374‑M1/1‑21 (MQ=255) tGCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggta < 1:1162002‑M1/50‑32 (MQ=255) gCATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat > 1:7467034‑M1/1‑18 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg < 1:5647020‑M1/50‑34 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:6786544‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatg > 1:1883822‑M1/1‑17 (MQ=255) cATTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtat < 1:7530272‑M1/49‑33 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt > 1:7492739‑M1/1‑16 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:8055662‑M1/50‑35 (MQ=255) aTTCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgt < 1:3548297‑M1/50‑35 (MQ=255) ttCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtt > 1:860025‑M1/1‑15 (MQ=255) tCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt > 1:5935431‑M1/1‑14 (MQ=255) tCCGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttt > 1:646335‑M1/1‑14 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:913478‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:5210843‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttg < 1:4351615‑M1/50‑39 (MQ=255) cGGCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgtttt < 1:3510785‑M1/49‑38 (MQ=255) ggCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgt > 1:2532145‑M1/1‑11 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc < 1:3214154‑M1/50‑41 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:8224046‑M1/1‑10 (MQ=255) gCCTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtc > 1:4597570‑M1/1‑10 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:6356216‑M1/1‑9 (MQ=255) ccTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtct > 1:3614738‑M1/1‑9 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg < 1:629517‑M1/50‑43 (MQ=255) cTGCAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctg > 1:4840230‑M1/1‑8 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:1184327‑M1/48‑44 (MQ=255) cAGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgc < 1:338799‑M1/48‑44 (MQ=255) aagTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcct > 1:5348179‑M1/2‑5 (MQ=255) aGTGttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctg > 1:5992030‑M1/1‑4 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:4103027‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:4249293‑M1/1‑3 (MQ=255) gtgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgc > 1:5355262‑M1/1‑3 (MQ=255) tgtttgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:4023242‑M1/1‑2 (MQ=255) tgttcgctttaaaacatatcatgaaactgtgtatgttttgtctgcctgct > 1:5779200‑M1/1‑2 (MQ=255) tgttcgctttaaaacatatcatgaaactgggtatgttttgtctgcctgct > 1:7107048‑M1/1‑2 (MQ=255) gttcgctttaaaacatatcatgaaactgtatgttttgtctgcctgctctg > 1:2330968‑M1/1‑1 (MQ=255) | AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGCAGGCCGGAGATAATCTTCAGATCGAAATCTTTTTACCGCCGCGATGGG > NC_000913/1129348‑1129445 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |