| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 114 [0] | [0] 114 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 111 (1.030) | 63/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
Only 100 of 114 total aligned reads displayed.
GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCTG > NC_000913/1140939‑1141038 | aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 1:3461147‑M2/50‑50 (MQ=255)aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 1:5071840‑M2/50‑50 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt > 1:4143340‑M2/49‑50 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt < 1:8130804‑M2/1‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc > 1:4398798‑M2/48‑50 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:6340181‑M2/3‑1 (MQ=255) gaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCg > 1:4182102‑M2/47‑50 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:2569868‑M2/46‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:5618468‑M2/6‑1 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt < 1:2141412‑M2/6‑1 (MQ=255) gcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTa > 1:3374625‑M2/41‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:7216632‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa < 1:3881489‑M2/10‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:399821‑M2/40‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:6144578‑M2/40‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:188551‑M2/40‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:6743635‑M2/40‑49 (MQ=255) ccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa < 1:3659726‑M2/12‑1 (MQ=255) ccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:6309300‑M2/39‑50 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:7799486‑M2/38‑49 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa > 1:408972‑M2/38‑49 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAAc < 1:3623325‑M2/13‑1 (MQ=255) cgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAAc < 1:3548662‑M2/13‑1 (MQ=255) gccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:1267075‑M2/37‑50 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 1:6626175‑M2/15‑1 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACa > 1:3255331‑M2/36‑49 (MQ=255) cggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata > 1:5420646‑M2/35‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:5135888‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:8257553‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:703026‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:7598192‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:1808443‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:6710844‑M2/34‑50 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:7278398‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:815646‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:6681056‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:3112389‑M2/18‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:6721724‑M2/18‑1 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:6811867‑M2/18‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:3484602‑M2/19‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:849931‑M2/32‑50 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:2149492‑M2/32‑50 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa < 1:1991253‑M2/19‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:6284003‑M2/31‑50 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:513557‑M2/20‑1 (MQ=255) cggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt < 1:7096595‑M2/20‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:3719161‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:874071‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:135119‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 1:4204031‑M2/21‑1 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 1:1419985‑M2/21‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:4680715‑M2/22‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:1279069‑M2/22‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:3274991‑M2/22‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:4735557‑M2/23‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:1334988‑M2/23‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:4267034‑M2/23‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:2425656‑M2/26‑50 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc < 1:7942974‑M2/25‑1 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 1:1398677‑M2/25‑50 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:2954623‑M2/26‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:5302188‑M2/26‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTg < 1:5349938‑M2/27‑1 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTg < 1:3552415‑M2/27‑1 (MQ=255) acaatgcattccggcctgcagagTTCGCTTTAAAACATATCATGAAACTg > 1:6008093‑M2/24‑50 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:18374‑M2/22‑50 (MQ=255) tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 1:1162002‑M2/31‑1 (MQ=255) gcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt > 1:7467034‑M2/19‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTAt < 1:7530272‑M2/32‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:5647020‑M2/33‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:6786544‑M2/18‑50 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:1883822‑M2/18‑50 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt < 1:8055662‑M2/34‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt > 1:860025‑M2/16‑50 (MQ=255) tccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt > 1:5935431‑M2/15‑50 (MQ=255) tccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt > 1:646335‑M2/15‑50 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtttt < 1:3510785‑M2/37‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:4351615‑M2/38‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:5210843‑M2/38‑1 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg < 1:913478‑M2/38‑1 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt > 1:2532145‑M2/12‑50 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc > 1:8224046‑M2/11‑50 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc > 1:4597570‑M2/11‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:5013248‑M2/10‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:6356216‑M2/10‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:3614738‑M2/10‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg < 1:629517‑M2/42‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc < 1:338799‑M2/43‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc < 1:1184327‑M2/43‑1 (MQ=255) aagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct > 1:5348179‑M2/6‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:5992030‑M2/5‑50 (MQ=255) gtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctgc > 1:4103027‑M2/4‑50 (MQ=255) tgTTTGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:4023242‑M2/3‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGTGTATGTTTTGTCTGCCTGct > 1:5779200‑M2/3‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:7107048‑M2/3‑50 (MQ=255) tgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGct > 1:7484570‑M2/3‑50 (MQ=255) gTTCGCTTTAAAACATATCATGAAACT‑‑GTATGTTTTGTCTGCCTgctctg > 1:2330968‑M2/2‑49 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct > 1:7948475/1‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct > 1:477233/1‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc < 1:2564290/49‑1 (MQ=255) | GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCTG > NC_000913/1140939‑1141038 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |