| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 140 [0] | [0] 140 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 136 (1.310) | 63/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 140 total aligned reads displayed.
ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 | ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:1197532‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:4533331‑M2/1‑1 (MQ=255)ttctaccagaaaattcacggcatcggctagggtgataccggcatcgata < 1:1938555‑M2/1‑1 (MQ=255) tctaccagaaaattcacggcatcggctagggtgataccggcatcgatAg < 1:880993‑M2/2‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGt < 1:4961314‑M2/3‑1 (MQ=255) ctaccagaaaattcacggcatcggctagggtgataccggcatcgatAGTc > 1:6069211‑M2/47‑50 (MQ=255) taccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCt > 1:5110866‑M2/46‑50 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg < 1:2398086‑M2/6‑1 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTg > 1:7555572‑M2/44‑49 (MQ=255) ccagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGt < 1:6676682‑M2/7‑1 (MQ=255) cagaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTa < 1:6987469‑M2/8‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:4845280‑M2/9‑1 (MQ=255) agaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTAt < 1:5738073‑M2/9‑1 (MQ=255) gaaaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATc < 1:6278193‑M2/10‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:6413013‑M2/39‑50 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:5949946‑M2/39‑50 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:7390827‑M2/39‑50 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg < 1:3803834‑M2/12‑1 (MQ=255) aaattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg < 1:7533465‑M2/12‑1 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg < 1:8223682‑M2/13‑1 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:2937094‑M2/38‑49 (MQ=255) aattcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAg > 1:6172362‑M2/38‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:2012622‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:1776971‑M2/37‑49 (MQ=255) attcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAgg > 1:1765280‑M2/37‑49 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:3056878‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:1163952‑M2/15‑1 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa > 1:6890172‑M2/36‑50 (MQ=255) ttcacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGaa < 1:1414841‑M2/15‑1 (MQ=255) ttcacggcatcggctagggggataccggcatcgatAGTCTGTATCAGGaa > 1:2243851‑M2/36‑50 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:1012157‑M2/34‑50 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:3393242‑M2/34‑50 (MQ=255) cacggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg > 1:6123065‑M2/34‑50 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 1:4048682‑M2/17‑1 (MQ=255) acggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATg < 1:6362260‑M2/17‑1 (MQ=255) cggcatcggctagggtgataccggcatcgatATTCTGTATCCGGAATGtt > 1:3521309‑M2/32‑50 (MQ=255) cggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGtt < 1:1952195‑M2/19‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:7955209‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:128864‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc < 1:6119519‑M2/20‑1 (MQ=255) ggcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTc > 1:5798467‑M2/31‑50 (MQ=255) gcatcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCg < 1:3891708‑M2/21‑1 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:1737717‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:5182459‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg < 1:3847924‑M2/23‑1 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:2135179‑M2/28‑50 (MQ=255) atcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCggg > 1:6822325‑M2/28‑50 (MQ=255) tcggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt < 1:1918442‑M2/24‑1 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:4292763‑M2/26‑49 (MQ=255) cggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGt > 1:2520120‑M2/26‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt < 1:175316‑M2/25‑1 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:5487408‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:4293712‑M2/25‑49 (MQ=255) ggctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGtt > 1:7184133‑M2/25‑49 (MQ=255) gctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa < 1:5221314‑M2/27‑1 (MQ=255) gctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaa < 1:904414‑M2/27‑1 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:8267743‑M2/23‑50 (MQ=255) ctagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa < 1:7887048‑M2/28‑1 (MQ=255) tagggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTaaa > 1:5615050‑M2/22‑49 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAatat > 1:3083361‑M2/20‑50 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:2715826‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAata < 1:7631208‑M2/30‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAat < 1:1389739‑M2/29‑1 (MQ=255) gggtgataccggcatcgatAGTCTGTATCAGGAATGCTCGGGTTAAata < 1:1691817‑M2/30‑1 (MQ=255) ggtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATc < 1:226355‑M2/32‑1 (MQ=255) gtgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCa < 1:6018157‑M2/33‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:7265260‑M2/17‑50 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:2427491‑M2/34‑1 (MQ=255) tgataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg < 1:4699052‑M2/34‑1 (MQ=255) gataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAg > 1:3610331‑M2/16‑49 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGc < 1:4262553‑M2/35‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 1:5723987‑M2/36‑1 (MQ=255) ataccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa < 1:3016696‑M2/36‑1 (MQ=255) taccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCa > 1:1332213‑M2/14‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:7870409‑M2/13‑49 (MQ=255) accggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaa > 1:7277393‑M2/13‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaa < 1:8191969‑M2/39‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:4063268‑M2/12‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:7799674‑M2/12‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:5424337‑M2/12‑49 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa < 1:1388177‑M2/38‑1 (MQ=255) ccggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:6704808‑M2/12‑49 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaaaa < 1:280558‑M2/40‑1 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:5226415‑M2/11‑48 (MQ=255) cggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCaaa > 1:2762988‑M2/11‑48 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:6145677‑M2/41‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:4824307‑M2/10‑50 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:5614125‑M2/41‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:4030797‑M2/41‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg < 1:7153945‑M2/41‑1 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:3398390‑M2/10‑50 (MQ=255) ggcatcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAg > 1:2288749‑M2/10‑50 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc < 1:2638945‑M2/43‑1 (MQ=255) catcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGcc > 1:256248‑M2/8‑50 (MQ=255) tcgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:5145553‑M2/6‑50 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:3511169‑M2/5‑49 (MQ=255) cgatAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCg > 1:5303121‑M2/5‑49 (MQ=255) atAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt < 1:4115267‑M2/48‑1 (MQ=255) tAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCAt > 1:4374910‑M2/2‑49 (MQ=255) aGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGcatca > 1:4778656/1‑50 (MQ=255) | ATAATATATCCAGAGAATAAAATCTGTCGCAGATAAGGTTGTATTAATAGTCTGTATCAGGAATGTTCGGGTTAAATATCAGCAAAAAGCCCGCATCA > NC_000913/325363‑325460 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |