| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 263,514 | Δ61,897 bp | [ykfI]–ykgH | 71 genes [ykfI], yafW, ykfH, ykfG, yafX, ykfF, ykfB, yafY, yafZ, ykfA, perR, insN, insI‑1, insN, eyeA, ykfC, insH‑1, mmuP, mmuM, afuC, afuB, insB‑2, insA‑2, yagB, yagA, yagE, yagF, yagG, yagH, xynR, argF, ykgS, insB‑3, insA‑3, yagJ, yagK, yagL, yagM, ykgV, yagN, intF, yagP, paoD, paoC, paoB, paoA, yagU, ykgJ, ecpE, ecpD, ecpC, ecpB, ecpA, ecpR, ykgL, ykgO, ykgM, ykgR, ykgP, eaeH, insE‑1, insF‑1, ykgA, rclC, rclB, rclA, rclR, ykgE, ykgF, ykgG, ykgH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263514 | 325410 | 61897 | 140 [0] | [0] 140 | [ykfI]–ykgH | [ykfI],yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI‑1,insN,eyeA,ykfC,insH‑1,mmuP,mmuM,afuC,afuB,insB‑2,insA‑2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,ykgS,insB‑3,insA‑3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,ecpR,ykgL,ykgO,ykgM,ykgR,ykgP,eaeH,insE‑1,insF‑1,ykgA,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 263513 | 0 (0.000) | 136 (1.310) | 63/94 | 0.0 | 100% | coding (157/342 nt) | ykfI | CP4‑6 prophage; toxin of the YkfI‑YafW toxin‑antitoxin system |
| ? | NC_000913 | 325411 = | 0 (0.000) | intergenic (‑47/+166) | ykgH/betA | uncharacterized protein YkgH/choline dehydrogenase | |||||
Only 100 of 140 total aligned reads displayed.
TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263465‑263561 | tttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGAT < 1:8277328‑M1/49‑1 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:1197532‑M1/49‑2 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:4533331‑M1/49‑2 (MQ=255) ttCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATa < 1:1938555‑M1/49‑2 (MQ=255) tCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATag < 1:880993‑M1/49‑3 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 1:4961314‑M1/49‑4 (MQ=255) cTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagt < 1:5204186‑M1/49‑4 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg < 1:2398086‑M1/49‑7 (MQ=255) ccAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctg > 1:7555572‑M1/1‑43 (MQ=255) cAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgta < 1:6987469‑M1/50‑9 (MQ=255) aGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtat < 1:5738073‑M1/50‑10 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag < 1:3803834‑M1/50‑13 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:6210494‑M1/1‑38 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:7390827‑M1/1‑38 (MQ=255) aaaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:6413013‑M1/1‑38 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg < 1:8223682‑M1/50‑14 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:6172362‑M1/1‑37 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:2937094‑M1/1‑37 (MQ=255) aaTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcag > 1:7104382‑M1/1‑37 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:1765280‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:1776971‑M1/1‑36 (MQ=255) aTTCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcagg > 1:2012622‑M1/1‑36 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:1163952‑M1/50‑16 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:5284922‑M1/50‑16 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa > 1:3056878‑M1/1‑35 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa > 1:6890172‑M1/1‑35 (MQ=255) ttCACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaa < 1:1414841‑M1/50‑16 (MQ=255) ttCACGGCATCGGCTAGGGGGATACCGGCATCGATagtctgtatcaggaa > 1:2243851‑M1/1‑35 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:1012157‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:6123065‑M1/1‑33 (MQ=255) cACGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg > 1:3393242‑M1/1‑33 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:4048682‑M1/49‑18 (MQ=255) aCGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatg < 1:6362260‑M1/49‑18 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATattctgtatccggaatgtt > 1:3521309‑M1/1‑31 (MQ=255) cGGCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgtt < 1:1952195‑M1/50‑20 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:7955209‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:6133565‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:128864‑M1/50‑21 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc > 1:5798467‑M1/1‑30 (MQ=255) ggCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttc < 1:6119519‑M1/50‑21 (MQ=255) gCATCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcg < 1:3891708‑M1/50‑22 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:1737717‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:5182459‑M1/1‑27 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg < 1:3847924‑M1/50‑24 (MQ=255) aTCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcggg > 1:2135179‑M1/1‑27 (MQ=255) tCGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt < 1:1918442‑M1/50‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:2520120‑M1/1‑25 (MQ=255) cGGCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggt > 1:4292763‑M1/1‑25 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt < 1:175316‑M1/49‑26 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:4293712‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:5487408‑M1/1‑24 (MQ=255) ggCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggtt > 1:7184133‑M1/1‑24 (MQ=255) gCTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaa < 1:904414‑M1/50‑28 (MQ=255) cTAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:8267743‑M1/1‑22 (MQ=255) tAGGGTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaa > 1:5615050‑M1/1‑21 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatat > 1:3083361‑M1/1‑19 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaata < 1:2715826‑M1/49‑31 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:5574661‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaat < 1:1389739‑M1/48‑30 (MQ=255) gggTGATACCGGCATCGATagtctgtatcaggaatgctcgggttaaata < 1:1691817‑M1/49‑31 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:226355‑M1/50‑33 (MQ=255) ggTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatc < 1:5933915‑M1/50‑33 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:6467400‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:6018157‑M1/50‑34 (MQ=255) gTGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatca < 1:7576516‑M1/50‑34 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:4699052‑M1/50‑35 (MQ=255) tGATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag < 1:2427491‑M1/50‑35 (MQ=255) gATACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcag > 1:3610331‑M1/1‑15 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca < 1:3016696‑M1/50‑37 (MQ=255) aTACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagc < 1:4262553‑M1/49‑36 (MQ=255) tACCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagca > 1:1332213‑M1/1‑13 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:7870409‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:6041734‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:7277393‑M1/1‑12 (MQ=255) aCCGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaa > 1:7236229‑M1/1‑12 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:7799674‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:4063268‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:8068359‑M1/49‑39 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:7421956‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:5424337‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:6704808‑M1/1‑11 (MQ=255) ccGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa < 1:1388177‑M1/49‑39 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaa < 1:280558‑M1/50‑41 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:5029732‑M1/1‑10 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:2762988‑M1/1‑10 (MQ=255) cGGCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaa > 1:5226415‑M1/1‑10 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag < 1:4030797‑M1/50‑42 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:4824307‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:3398390‑M1/1‑9 (MQ=255) ggCATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaag > 1:2288749‑M1/1‑9 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc > 1:256248‑M1/1‑7 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:5715678‑M1/50‑44 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:672454‑M1/50‑44 (MQ=255) cATCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcc < 1:2638945‑M1/50‑44 (MQ=255) tCGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:5145553‑M1/1‑5 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:3511169‑M1/1‑4 (MQ=255) cGATagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccg > 1:7878457‑M1/1‑4 (MQ=255) aTagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat < 1:4115267‑M1/50‑49 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:4374910‑M1/1‑1 (MQ=255) tagtctgtatcaggaatgttcgggttaaatatcagcaaaaagcccgcat > 1:483317‑M1/1‑1 (MQ=255) | TTTCTACCAGAAAATTCACGGCATCGGCTAGGGTGATACCGGCATCGATGTGTTCCTTAATCACAGCCTCATTGCAGAATGGCGTGTCGTTTATTGT > NC_000913/263465‑263561 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |