BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	687,860	Δ1,185 bp	IS5‑mediated	insH‑3	insH‑3

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	687860	689044	1185	142 [0]	[0] 145	insH‑3	insH‑3

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 687859	0 (0.000)	135 (1.280)	74/96	0.0	100%	noncoding (1187/1195 nt)	IS5	repeat region
*	?	NC_000913	689045 =	0 (0.000)	135 (1.280)	74/96	0.0	100%	noncoding (1/1195 nt)	IS5	repeat region

Only 100 of 142 total aligned reads displayed.

TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687811‑687908

tATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCc                                                  >  1:7784882‑M1/1‑49 (MQ=255)

   cGTCTGCAACTTTATTGTGCAGTGTCGTGCCTGTTAGGGAAGGTGCct                                                 >  1:6700779‑M1/1‑46 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:2703150‑M1/1‑45 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              >  1:1391096‑M1/1‑45 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:4737999‑M1/50‑6 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttag                                              <  1:6247673‑M1/50‑6 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctta                                               <  1:94922‑M1/49‑5 (MQ=255)

    gTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCctta                                               <  1:4049289‑M1/49‑5 (MQ=255)

     tCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttagg                                             <  1:7466150‑M1/50‑7 (MQ=255)

       tGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            >  1:1662751‑M1/1‑42 (MQ=255)

       tGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            >  1:2709264‑M1/1‑42 (MQ=255)

       tGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            >  1:1961040‑M1/1‑42 (MQ=255)

        gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:6959620‑M1/1‑41 (MQ=255)

        gCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:7055960‑M1/1‑41 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          >  1:6027920‑M1/1‑40 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:5466280‑M1/49‑10 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaa                                          <  1:8053387‑M1/49‑10 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:1130703‑M1/48‑9 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggta                                           <  1:2317889‑M1/48‑9 (MQ=255)

         cAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggt                                            <  1:1035492‑M1/47‑8 (MQ=255)

          aaCTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaaca                                        >  1:3609103‑M1/1‑39 (MQ=255)

            cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:4695940‑M1/1‑37 (MQ=255)

            cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      <  1:1852257‑M1/50‑14 (MQ=255)

            cTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:7916156‑M1/1‑37 (MQ=255)

             tttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:4888831‑M1/1‑36 (MQ=255)

              ttATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatt                                      >  1:3709426‑M1/1‑35 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:861080‑M1/1‑34 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   >  1:3283931‑M1/1‑34 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:4294872‑M1/49‑16 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:7905408‑M1/49‑16 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattta                                    <  1:312691‑M1/49‑16 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt                                     <  1:6882081‑M1/48‑15 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt                                     <  1:4699003‑M1/48‑15 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt                                     <  1:1387557‑M1/48‑15 (MQ=255)

               tATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacattt                                     <  1:2552100‑M1/48‑15 (MQ=255)

                aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagt                                  >  1:708715‑M1/1‑33 (MQ=255)

                aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:2809598‑M1/49‑17 (MQ=255)

                aTTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttag                                   <  1:6052509‑M1/49‑17 (MQ=255)

                 ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 <  1:1053834‑M1/50‑19 (MQ=255)

                 ttGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtt                                 >  1:7620545‑M1/1‑32 (MQ=255)

                   gtgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagttt                                <  1:7428495‑M1/49‑20 (MQ=255)

                    tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:6048973‑M1/1‑29 (MQ=255)

                    tgCAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttg                               <  1:1449133‑M1/49‑21 (MQ=255)

                    cgcAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttgg                              >  1:5228668‑M1/2‑29 (MQ=255)

                      cAGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggct                            <  1:1347784‑M1/50‑24 (MQ=255)

                       aGTGTTGTGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggcta                           <  1:2258058‑M1/50‑25 (MQ=255)

                         tgttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaa                         >  1:6068103‑M1/1‑24 (MQ=255)

                          gttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        >  1:7110938‑M1/1‑23 (MQ=255)

                          gttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaat                        >  1:7287621‑M1/1‑23 (MQ=255)

                           ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:1010649‑M1/1‑22 (MQ=255)

                           ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:2357112‑M1/50‑29 (MQ=255)

                           ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:7657988‑M1/50‑29 (MQ=255)

                           ttgtGCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       <  1:115633‑M1/50‑29 (MQ=255)

                            tgtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatg                       >  1:6755534‑M1/1‑21 (MQ=255)

                             gtgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgt                      >  1:2096935‑M1/1‑20 (MQ=255)

                              tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaa                    <  1:7432784‑M1/50‑32 (MQ=255)

                              tgCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2074136‑M1/1‑19 (MQ=255)

                               gCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:3920879‑M1/1‑18 (MQ=255)

                               gCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:2824689‑M1/1‑18 (MQ=255)

                               gCCTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:6358474‑M1/1‑18 (MQ=255)

                                ccTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:1816369‑M1/1‑17 (MQ=255)

                                 cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaaga                 <  1:4615105‑M1/50‑35 (MQ=255)

                                 cTGTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgta                     >  1:7005754‑M1/1‑16 (MQ=255)

                                   gTTAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               >  1:2061521‑M1/1‑14 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              <  1:5820544‑M1/50‑38 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              <  1:2690334‑M1/50‑38 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              <  1:3746823‑M1/50‑38 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatat              <  1:8319934‑M1/50‑38 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagata               <  1:1942116‑M1/49‑37 (MQ=255)

                                    ttAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagat                <  1:2552203‑M1/48‑36 (MQ=255)

                                     tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:4200985‑M1/1‑12 (MQ=255)

                                     tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:1696862‑M1/1‑12 (MQ=255)

                                     tAGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatatt             >  1:7298601‑M1/1‑12 (MQ=255)

                                      aGGGAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            >  1:2182381‑M1/1‑11 (MQ=255)

                                       gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgc           <  1:5889296‑M1/50‑41 (MQ=255)

                                       gggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattg            <  1:3581255‑M1/49‑40 (MQ=255)

                                        ggAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgct          >  1:6292084‑M1/1‑9 (MQ=255)

                                         gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:2330187‑M1/50‑43 (MQ=255)

                                         gAAGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctg         <  1:5734169‑M1/50‑43 (MQ=255)

                                          aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:2399721‑M1/1‑7 (MQ=255)

                                          aaGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgt        >  1:2494745‑M1/1‑7 (MQ=255)

                                           aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt       >  1:5823959‑M1/1‑6 (MQ=255)

                                           aGGTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtt       <  1:5705723‑M1/50‑45 (MQ=255)

                                            ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:3199989‑M1/50‑46 (MQ=255)

                                            ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:4618203‑M1/1‑5 (MQ=255)

                                            ggTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      <  1:4112869‑M1/50‑46 (MQ=255)

                                             gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttt     <  1:6621652‑M1/50‑47 (MQ=255)

                                             gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:2177266‑M1/1‑4 (MQ=255)

                                             gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:2286932‑M1/1‑4 (MQ=255)

                                             gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:8268494‑M1/1‑4 (MQ=255)

                                             gTGCcttaggtaacatttagtttggctaaatgtaaagatattgctgttt      >  1:1458756‑M1/1‑4 (MQ=255)

                                              tGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttta    <  1:5021623‑M1/50‑48 (MQ=255)

                                              tGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttta    <  1:5062249‑M1/50‑48 (MQ=255)

                                              tGCcttaggtaacatttagtttggctaaatgtaaagatattgctgtttta    >  1:6874648‑M1/1‑3 (MQ=255)

                                               gCcttaggtgacatttagtttggctaaatgtaaagatattgctgttttat   >  1:1739566‑M1/1‑2 (MQ=255)

                                               gCcttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   >  1:4034468‑M1/1‑2 (MQ=255)

                                                ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  1:416833‑M1/50‑50 (MQ=255)

                                                ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  1:584242‑M1/50‑50 (MQ=255)

                                                ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttatt  <  1:6440144‑M1/50‑50 (MQ=255)

                                                ccttaggtaacatttagtttggctaaatgtaaagatattgctgttttat   <  1:7898283‑M1/49‑49 (MQ=255)

TATCGTCTGCAACTTTATTGTGCAGTGTTGTGCCTGTTAGGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTC  >  NC_000913/687811‑687908

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`