Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 819,776 Δ62,977 bp ybhL–deoR 57 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 819776 882752 62977 105 [0] [0] 103 ybhL–deoR ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 819775NA (NA)103 (0.950) 64/98 0.0 100% noncoding (17/27 nt) REPt74 REPt74
?NC_000913 882753 = 0 (0.000)intergenic (‑19/+39) deoR/ybjG DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase

Only 100 of 105 total aligned reads displayed.

GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT  >  NC_000913/819726‑819823
                                                 |                                                
gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt                                                  <  1:5665196/50‑1 (MQ=255)
gcagGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCt                                                  <  1:2852239/50‑1 (MQ=255)
 cAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTt                                                 >  1:2921227‑M1/1‑49 (MQ=255)
  aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt                                                >  1:513414‑M1/1‑48 (MQ=255)
  aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt                                                <  1:3920943‑M1/50‑3 (MQ=255)
  aGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTtt                                                >  1:1842090‑M1/1‑48 (MQ=255)
    gcggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttga                                              <  1:5198267‑M1/50‑5 (MQ=255)
     cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa                                             <  1:1052483‑M1/50‑6 (MQ=255)
     cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaa                                             <  1:5701137‑M1/50‑6 (MQ=255)
     cggcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttg                                               >  1:1860512‑M1/1‑45 (MQ=255)
       gcAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagc                                           <  1:700402‑M1/50‑8 (MQ=255)
        cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg                                          <  1:5329650‑M1/50‑9 (MQ=255)
        cAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcg                                          <  1:1280960‑M1/50‑9 (MQ=255)
         aaaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcga                                         <  1:384027‑M1/50‑10 (MQ=255)
          aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag                                        <  1:6571116‑M1/50‑11 (MQ=255)
          aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag                                        <  1:5561135‑M1/50‑11 (MQ=255)
          aaaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgag                                        >  1:4473826‑M1/1‑40 (MQ=255)
           aaCGCTGTTAG‑TTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc                                      <  1:7717799‑M1/50‑13 (MQ=255)
           aaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagc                                       <  1:826111‑M1/50‑12 (MQ=255)
           aaCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagc                                       >  1:3066548‑M1/1‑39 (MQ=255)
            aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc                                      >  1:1187554‑M1/1‑38 (MQ=255)
            aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc                                      <  1:7025193‑M1/50‑13 (MQ=255)
            aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc                                      <  1:1067770‑M1/50‑13 (MQ=255)
            aCGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagcc                                      <  1:4891620‑M1/50‑13 (MQ=255)
              gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc                                    >  1:268165‑M1/1‑36 (MQ=255)
              gCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgc                                    >  1:5667569‑M1/1‑36 (MQ=255)
               cTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct                                   >  1:6331123‑M1/1‑35 (MQ=255)
                tGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgct                                   >  1:3268500‑M1/1‑34 (MQ=255)
                 ggTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc                                  >  1:7742282‑M1/1‑33 (MQ=255)
                  gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctca                                 <  1:6637744‑M1/49‑18 (MQ=255)
                  gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc                                  <  1:1175321‑M1/48‑17 (MQ=255)
                  gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc                                  <  1:6654602‑M1/48‑17 (MQ=255)
                  gTAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctc                                  <  1:4427025‑M1/48‑17 (MQ=255)
                   tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaat                               <  1:6350459‑M1/50‑20 (MQ=255)
                   tAGTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaat                               <  1:6399765‑M1/50‑20 (MQ=255)
                     gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac                             <  1:7806210‑M1/50‑22 (MQ=255)
                     gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac                             >  1:2231458‑M1/1‑29 (MQ=255)
                     gTTTTTTGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaata                              <  1:1039790‑M1/49‑21 (MQ=255)
                      ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact                            <  1:5688136‑M1/50‑23 (MQ=255)
                      ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact                            <  1:4788615‑M1/50‑23 (MQ=255)
                      ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatact                            <  1:7871302‑M1/50‑23 (MQ=255)
                      ttttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatac                             >  1:7232865‑M1/1‑28 (MQ=255)
                        ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta                           >  1:6954352‑M1/1‑26 (MQ=255)
                        ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta                           <  1:6379650‑M1/49‑24 (MQ=255)
                        ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta                           <  1:440009‑M1/49‑24 (MQ=255)
                        ttttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatacta                           <  1:6505508‑M1/49‑24 (MQ=255)
                          ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac                        >  1:6289358‑M1/1‑24 (MQ=255)
                          ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacac                        >  1:6458923‑M1/1‑24 (MQ=255)
                          ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca                         <  1:6003353‑M1/49‑26 (MQ=255)
                          ttGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactaca                         <  1:6669466‑M1/49‑26 (MQ=255)
                           tGTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact                       >  1:431292‑M1/1‑23 (MQ=255)
                            gTTAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacact                       <  1:5840727‑M1/49‑28 (MQ=255)
                             ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttt                     >  1:4091827‑M1/1‑21 (MQ=255)
                             ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttt                     >  1:7273584‑M1/1‑21 (MQ=255)
                             ttAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttt                     <  1:7857767‑M1/50‑30 (MQ=255)
                              tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    >  1:2500900‑M1/1‑20 (MQ=255)
                              tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    >  1:5544728‑M1/1‑20 (MQ=255)
                              tAGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    >  1:7912391‑M1/1‑20 (MQ=255)
                               aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    >  1:5194638‑M1/1‑19 (MQ=255)
                               aGCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    <  1:3536115‑M1/49‑31 (MQ=255)
                                gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttta                  <  1:7448056‑M1/50‑33 (MQ=255)
                                gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttta                  <  1:6012395‑M1/50‑33 (MQ=255)
                                gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacacttttta                  <  1:3079112‑M1/50‑33 (MQ=255)
                                gCCGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttt                    >  1:5555108‑M1/1‑18 (MQ=255)
                                 ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 <  1:2278708‑M1/50‑34 (MQ=255)
                                 ccGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 <  1:1255969‑M1/50‑34 (MQ=255)
                                  cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 >  1:1489020‑M1/1‑16 (MQ=255)
                                  cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 >  1:7438910‑M1/1‑16 (MQ=255)
                                  cGGATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 >  1:4687335‑M1/1‑16 (MQ=255)
                                   ggATAAGGCACCGCTttgaagcgagccgctcaatactacactttttag                 >  1:1902462‑M1/1‑15 (MQ=255)
                                     aTAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca               >  1:5023220‑M1/1‑13 (MQ=255)
                                      tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagcagag            <  1:3763916‑M1/50‑39 (MQ=255)
                                      tAAGGCACCGCTttgaagcgagccgctcaatactacactttttagca               >  1:625078‑M1/1‑12 (MQ=255)
                                       aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca               >  1:2035809‑M1/1‑11 (MQ=255)
                                       aaGGCACCGCTttgaagcgagccgctcaatactacactttttagca               >  1:2173149‑M1/1‑11 (MQ=255)
                                        aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat          <  1:1388299‑M1/50‑41 (MQ=255)
                                        aGGCACCGCTttgaagcgagccgctcaatactacactttttagcagagat          <  1:7472157‑M1/50‑41 (MQ=255)
                                         ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagatc         <  1:3217899‑M1/50‑42 (MQ=255)
                                         ggCACCGCTttgaagcgagccgctcaatactacactttttagcagagat          >  1:3594986‑M1/1‑9 (MQ=255)
                                          gaaccGCTttgaagcgagccgctcaatactacactttttagcagagatca        <  1:6218328‑M1/48‑43 (MQ=255)
                                          gCACCGCTttgaagcgagccgctcaatactacactttttagcagagat          >  1:3750655‑M1/1‑8 (MQ=255)
                                           cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag       <  1:3450989‑M1/50‑44 (MQ=255)
                                           cACCGCTttgaagcgagccgctcaatactacactttttagcagagatcag       >  1:7443721‑M1/1‑7 (MQ=255)
                                            aCCGCTttgaagcgagccgctcaatactacactttttagcagagatcagt      >  1:6737359‑M1/1‑6 (MQ=255)
                                             ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc     <  1:5930949‑M1/50‑46 (MQ=255)
                                             ccGCTttgaagcgagccgctcaatactacactttttagcagagatcagtc     <  1:8155674‑M1/50‑46 (MQ=255)
                                              cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca    >  1:4686208‑M1/1‑4 (MQ=255)
                                              cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca    >  1:6480413‑M1/1‑4 (MQ=255)
                                              cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca    >  1:2180104‑M1/1‑4 (MQ=255)
                                              cGCTttgaagcgagccgctcaatactacactttttagcagagatcagtca    <  1:6603255‑M1/50‑47 (MQ=255)
                                               gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac   >  1:5200348‑M1/1‑3 (MQ=255)
                                               gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac   >  1:2854077‑M1/1‑3 (MQ=255)
                                               gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac   >  1:2158791‑M1/1‑3 (MQ=255)
                                               gCTttgaagcgagccgctcaatactacactttttagcagagatcagtcac   <  1:7729544‑M1/50‑48 (MQ=255)
                                                cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:8089295‑M1/1‑2 (MQ=255)
                                                cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:6027032‑M1/1‑2 (MQ=255)
                                                cTttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:5655677‑M1/1‑2 (MQ=255)
                                                 tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:5592040‑M1/1‑1 (MQ=255)
                                                 tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:3879392‑M1/1‑1 (MQ=255)
                                                 tttgaagcgagccgctcaatactacactttttagcagagatcagtcacg  >  1:167062‑M1/1‑1 (MQ=255)
                                                 |                                                
GCAGGCGGCAAAACGCTGGTAGTTTTTTGTTAGCCGGATAAGGCACCGCTGCGTCCGGCAATTTCACCGCTCAGTACATACGTTTACGCTGCGTCGAT  >  NC_000913/819726‑819823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑