| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 819,776 | Δ62,977 bp | ybhL–deoR | 57 genes ybhL, ybhM, ybhN, clsB, ybhP, ybhQ, ybhR, ybhS, ybhF, ybhG, cecR, rhlE, ybiA, dinG, ybiB, hcxB, ybiJ, ybiI, ybiX, fiu, mcbA, rlmF, ybiO, glnQ, glnP, glnH, dps, rhtA, yliM, ompX, opgE, rybA, mntS, mntR, ybiR, ldtB, ybiT, ybiU, ybiV, ybiW, ybiY, fsaA, moeB, moeA, iaaA, gsiA, gsiB, gsiC, gsiD, pdeI, dgcI, rimO, bssR, yliI, gstB, dacC, deoR |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 819776 | 882752 | 62977 | 105 [0] | [0] 103 | ybhL–deoR | ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 819775 | NA (NA) | 103 (0.950) | 64/98 | 0.0 | 100% | noncoding (17/27 nt) | REPt74 | REPt74 |
| ? | NC_000913 | 882753 = | 0 (0.000) | intergenic (‑19/+39) | deoR/ybjG | DNA‑binding transcriptional repressor DeoR/undecaprenyl pyrophosphate phosphatase | |||||
Only 100 of 103 total aligned reads displayed.
GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 | caggcggcaaaacgctggtagttttttgttagccggataaggcaccgctt > 1:2921227‑M2/50‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:513414‑M2/49‑50 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt < 1:3920943‑M2/2‑1 (MQ=255) aggcggcaaaacgctggtagttttttgttagccggataaggcaccgcttt > 1:1842090‑M2/49‑50 (MQ=255) gcggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGa < 1:5198267‑M2/4‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTg > 1:1860512‑M2/46‑48 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:1052483‑M2/5‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:6672566‑M2/5‑1 (MQ=255) cggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGaa < 1:5701137‑M2/5‑1 (MQ=255) ggcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAg < 1:4429518‑M2/6‑1 (MQ=255) gcaaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGc < 1:700402‑M2/7‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCg < 1:5329650‑M2/8‑1 (MQ=255) caaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCg < 1:1280960‑M2/8‑1 (MQ=255) aaaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGa < 1:384027‑M2/9‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:6571116‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:5733146‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg < 1:5561135‑M2/10‑1 (MQ=255) aaacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAg > 1:4473826‑M2/41‑50 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc < 1:826111‑M2/11‑1 (MQ=255) aacgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGc > 1:3066548‑M2/40‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:7025193‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:1067770‑M2/12‑1 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc > 1:1187554‑M2/39‑50 (MQ=255) acgctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:4891620‑M2/12‑1 (MQ=255) aacgctgttagtttttgttagccggataaggcaccgctTTGAAGCGAGcc < 1:7717799‑M2/12‑1 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:5667569‑M2/37‑50 (MQ=255) gctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGc > 1:268165‑M2/37‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:6331123‑M2/36‑50 (MQ=255) ctggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt < 1:2607411‑M2/15‑1 (MQ=255) tggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCt > 1:3268500‑M2/35‑49 (MQ=255) ggtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc > 1:7742282‑M2/34‑49 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:4427025‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:1175321‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTc < 1:6654602‑M2/16‑1 (MQ=255) gtagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCa < 1:6637744‑M2/17‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:6399765‑M2/19‑1 (MQ=255) tagttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAt < 1:6350459‑M2/19‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac < 1:7806210‑M2/21‑1 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:2231458‑M2/30‑50 (MQ=255) gttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAta < 1:1039790‑M2/20‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:5688136‑M2/22‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:7871302‑M2/22‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtact < 1:4788615‑M2/22‑1 (MQ=255) ttttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtac > 1:7232865‑M2/29‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:6379650‑M2/23‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:6505508‑M2/23‑1 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta > 1:6954352‑M2/27‑49 (MQ=255) ttttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAAtacta < 1:440009‑M2/23‑1 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTacac > 1:6458923‑M2/25‑50 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:6669466‑M2/25‑1 (MQ=255) ttgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTaca < 1:6003353‑M2/25‑1 (MQ=255) tgttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt > 1:431292‑M2/24‑50 (MQ=255) gttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACt < 1:5840727‑M2/27‑1 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:7273584‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt > 1:4091827‑M2/22‑50 (MQ=255) ttagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACttt < 1:7857767‑M2/29‑1 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:5544728‑M2/21‑50 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:7912391‑M2/21‑50 (MQ=255) tagccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:2500900‑M2/21‑50 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:5194638‑M2/20‑49 (MQ=255) agccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt < 1:3536115‑M2/30‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACtttt > 1:5555108‑M2/19‑48 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:7448056‑M2/32‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:6012395‑M2/32‑1 (MQ=255) gccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTa < 1:3079112‑M2/32‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:2278708‑M2/33‑1 (MQ=255) ccggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg < 1:1255969‑M2/33‑1 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:4687335‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:7438910‑M2/17‑49 (MQ=255) cggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1489020‑M2/17‑49 (MQ=255) ggataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAg > 1:1902462‑M2/16‑48 (MQ=255) ataaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:5023220‑M2/14‑48 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCagag < 1:3763916‑M2/38‑1 (MQ=255) taaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:625078‑M2/13‑47 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:2173149‑M2/12‑46 (MQ=255) aaggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa > 1:2035809‑M2/12‑46 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:7472157‑M2/40‑1 (MQ=255) aggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt < 1:1388299‑M2/40‑1 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt > 1:3594986‑M2/10‑49 (MQ=255) ggcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATc < 1:3217899‑M2/41‑1 (MQ=255) gcaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGAt > 1:3750655‑M2/9‑48 (MQ=255) gaaccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:6218328‑M2/42‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg < 1:3450989‑M2/43‑1 (MQ=255) caccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAg > 1:7443721‑M2/8‑50 (MQ=255) accgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGt > 1:6737359‑M2/7‑50 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc < 1:8155674‑M2/45‑1 (MQ=255) ccgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTc < 1:5930949‑M2/45‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:4686208‑M2/5‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa < 1:6603255‑M2/46‑1 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:6480413‑M2/5‑50 (MQ=255) cgctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCa > 1:2180104‑M2/5‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:7729544‑M2/47‑1 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:2158791‑M2/4‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:5200348‑M2/4‑50 (MQ=255) gctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc > 1:2854077‑M2/4‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:5655677‑M2/3‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:8089295‑M2/3‑50 (MQ=255) ctTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:6027032‑M2/3‑50 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:5592040‑M2/2‑49 (MQ=255) tTTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 1:167062‑M2/2‑49 (MQ=255) | GCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACG > NC_000913/882704‑882800 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |