BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,720,634	Δ1,442 bp	IS150‑mediated	insJ–insK	insJ, insK

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3720634	3722075	1442	171 [0]	[0] 168	insJ–insK	insJ,insK

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3720633	0 (0.000)	167 (1.540)	76/98	0.0	100%	noncoding (1/1443 nt)	IS150	repeat region
*	?	NC_000913	3722076 =	0 (0.000)	167 (1.540)	76/98	0.0	100%	intergenic (+27/+252)	insK/glyS	IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta

Only 100 of 171 total aligned reads displayed.

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   >  1:1466560/1‑49 (MQ=255)

cTATATTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   >  1:5593918/1‑49 (MQ=255)

 tataTTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 >  1:4643550‑M1/1‑48 (MQ=255)

  atatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                >  1:7881539‑M1/1‑47 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:4509372/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTAt                                                   <  1:3057225/46‑1 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               >  1:2266312‑M1/1‑46 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaact                                               <  1:8165440‑M1/50‑5 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaac                                                <  1:7650532‑M1/49‑4 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 <  1:523754‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 <  1:2847991‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 <  1:4838726‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaa                                                 <  1:2633174‑M1/48‑3 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                  <  1:2287241‑M1/47‑2 (MQ=255)

   tatTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATa                                                  <  1:5695138‑M1/47‑2 (MQ=255)

    atTTCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              >  1:7837203‑M1/1‑45 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:5427513‑M1/1‑44 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              <  1:1844204‑M1/49‑6 (MQ=255)

     tttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactt                                              <  1:7587608‑M1/49‑6 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:4691968‑M1/1‑43 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:2700757‑M1/1‑43 (MQ=255)

      ttCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaacttt                                             >  1:6867340‑M1/1‑43 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttga                                           >  1:7227223‑M1/1‑42 (MQ=255)

       tCTGC‑GCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttg                                            <  1:6722554‑M1/49‑8 (MQ=255)

           gcgcaTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                         >  1:4197210‑M1/3‑39 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       <  1:3348390‑M1/49‑13 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatt                                         <  1:7392839‑M1/47‑11 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgat                                          <  1:3641088‑M1/46‑10 (MQ=255)

            cgcATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgat                                          <  1:5073641‑M1/46‑10 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:5481830‑M1/50‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:1783264‑M1/50‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:5103553‑M1/50‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttat                                      <  1:4948406‑M1/50‑14 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:6554416‑M1/1‑37 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:4598149‑M1/1‑37 (MQ=255)

             gCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgattta                                       >  1:2425319‑M1/1‑37 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:6262768‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:5012404‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:6060511‑M1/50‑15 (MQ=255)

              cATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttata                                     <  1:7763116‑M1/50‑15 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:2525966‑M1/50‑16 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    >  1:4283506‑M1/1‑35 (MQ=255)

               aTTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatag                                    <  1:1905092‑M1/50‑16 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   <  1:1056214‑M1/50‑17 (MQ=255)

                ttCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   <  1:2387703‑M1/50‑17 (MQ=255)

                 tCCCAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:7459628‑M1/1‑33 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtc                                  <  1:6489620‑M1/49‑18 (MQ=255)

                  cccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagt                                   >  1:4586575‑M1/1‑32 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  1:7988634‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                <  1:3876485‑M1/50‑20 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcag                                >  1:5998709‑M1/1‑31 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtca                                 <  1:2358825‑M1/49‑19 (MQ=255)

                   ccAGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtaag                                <  1:6813666‑M1/50‑20 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:4860176‑M1/50‑22 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              >  1:6301494‑M1/1‑29 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:5115809‑M1/50‑22 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:5407571‑M1/50‑22 (MQ=255)

                     aGCCTCCTGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggt                              <  1:5810084‑M1/50‑22 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            <  1:2778112‑M1/50‑24 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            >  1:7395846‑M1/1‑27 (MQ=255)

                       cctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgg                            <  1:5027312‑M1/50‑24 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           <  1:691351‑M1/50‑25 (MQ=255)

                        ctcctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggg                           <  1:1173123‑M1/50‑25 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        >  1:1738519‑M1/1‑23 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtggggct                        >  1:7209909‑M1/1‑23 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          <  1:6245305‑M1/48‑26 (MQ=255)

                           ctGTGTTGATTTCCAACGAGTATaactttgatttatagtcaggtgggg                          <  1:6350660‑M1/48‑26 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctttt                     <  1:3262126‑M1/50‑31 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggctttt                     <  1:3423960‑M1/50‑31 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      <  1:6542466‑M1/49‑30 (MQ=255)

                              tgtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttt                      <  1:907609‑M1/49‑30 (MQ=255)

                               gtTGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttc                    >  1:2585892‑M1/1‑19 (MQ=255)

                                ttGATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttct                   <  1:7469503‑M1/50‑33 (MQ=255)

                                  gATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  <  1:7106409‑M1/49‑34 (MQ=255)

                                  gATTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctc                  <  1:5032199‑M1/49‑34 (MQ=255)

                                   aTTTCCAACGAGTATaactttgatttatagtcaggtggggcttttctct                 <  1:5723914‑M1/49‑35 (MQ=255)

                                   aTTTCCAACGAGAATaactttgatttatagtcaggtggggcttttctctg                >  1:5392267‑M1/1‑15 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               <  1:3069672‑M1/50‑37 (MQ=255)

                                    tttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgt               >  1:4067351‑M1/1‑14 (MQ=255)

                                     ttCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgtc              >  1:5534315‑M1/1‑13 (MQ=255)

                                      tCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgtct             >  1:970521‑M1/1‑12 (MQ=255)

                                      tCCAACGAGTATaactttgatttatagtcaggtggggcttttctctgtc              <  1:3805832‑M1/49‑38 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctgc           <  1:3241620‑M1/50‑41 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:8202061‑M1/49‑40 (MQ=255)

                                        cAACGAGTATaactttgatttatagtcaggtggggcttttctctgtctg            <  1:2212702‑M1/49‑40 (MQ=255)

                                         aaCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcc          >  1:2740926‑M1/1‑9 (MQ=255)

                                          aCGAGTATaactttgatttatagtcaggtggggcttttctctgtctgcct         <  1:528413‑M1/50‑43 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      <  1:7063020‑M1/50‑46 (MQ=255)

                                             aGTATaactttgatttatagtcaggtggggcttttctctgtctgcctttc      >  1:6472883‑M1/1‑5 (MQ=255)

                                              gTATaactttgatttatagtcaggtggggcttttctctgtctgcctttcg     >  1:2611297‑M1/1‑4 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:4000799‑M1/1‑3 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:6145491‑M1/1‑3 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  1:2185436‑M1/50‑48 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    <  1:1454333‑M1/50‑48 (MQ=255)

                                               tataactttgatttatagtcaggtggggcttttctctgtctgcctttcgg    >  1:1062298‑M1/1‑3 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:6231178‑M1/1‑2 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:6427010‑M1/1‑2 (MQ=255)

                                                ataactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:669175‑M1/1‑2 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggtg  <  1:3168151‑M1/50‑50 (MQ=255)

                                                 taactttgatttatagtcaggtggggcttttctctgtctgcctttcggt   >  1:421578‑M1/1‑1 (MQ=255)

CTATATTTCTGCGGCATTCCCAGCCTCCTGTGTTGATTTCCAACGAGTATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG  >  NC_000913/3720584‑3720682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`