| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 149 [0] | [0] 147 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 146 (1.380) | 76/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 147 total aligned reads displayed.
TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770195‑3770291 | acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTc < 1:6097408‑M2/2‑1 (MQ=255)acgagtttcatgacgagtcctttgtgcgaggaaaaatatcagtatggcTc < 1:6416729‑M2/2‑1 (MQ=255) cgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTc > 1:4220306‑M2/48‑49 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa < 1:4692689‑M2/4‑1 (MQ=255) gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa < 1:6291115‑M2/4‑1 (MQ=255) agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt < 1:184490‑M2/5‑1 (MQ=255) gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt > 1:4981911‑M2/45‑49 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:3748996‑M2/7‑1 (MQ=255) tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa < 1:2480185‑M2/7‑1 (MQ=255) tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc > 1:6987846‑M2/42‑50 (MQ=255) catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc < 1:6148299‑M2/9‑1 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc > 1:7506017‑M2/40‑49 (MQ=255) atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATcc < 1:1397519‑M2/10‑1 (MQ=255) gccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa > 1:3397418‑M2/38‑50 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa < 1:1922786‑M2/13‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:4657572‑M2/14‑1 (MQ=255) ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt < 1:2371188‑M2/14‑1 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt > 1:3881333‑M2/36‑49 (MQ=255) cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa < 1:1234757‑M2/15‑1 (MQ=255) gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa < 1:7943849‑M2/16‑1 (MQ=255) agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa < 1:2185777‑M2/17‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:1203109‑M2/33‑47 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:7269093‑M2/33‑47 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:3328378‑M2/18‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:5592592‑M2/18‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:2369035‑M2/18‑1 (MQ=255) gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAg < 1:1848893‑M2/18‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa > 1:5937694‑M2/32‑46 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:1974530‑M2/19‑1 (MQ=255) tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa < 1:3376765‑M2/19‑1 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:1646496‑M2/31‑49 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:6822773‑M2/31‑49 (MQ=255) cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa > 1:829955‑M2/31‑49 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt < 1:7725447‑M2/20‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt < 1:2072717‑M2/20‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:3491092‑M2/21‑1 (MQ=255) ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATa < 1:1477723‑M2/21‑1 (MQ=255) ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt > 1:5633643‑M2/28‑50 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:7250540‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa < 1:6781485‑M2/22‑1 (MQ=255) tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt < 1:3190881‑M2/23‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg < 1:5445071‑M2/24‑1 (MQ=255) gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg > 1:1599065‑M2/26‑49 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc < 1:2871121‑M2/25‑1 (MQ=255) tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa > 1:8191503‑M2/25‑50 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc < 1:5841291‑M2/28‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc < 1:1073990‑M2/28‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc < 1:4222296‑M2/28‑1 (MQ=255) cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:1957408‑M2/23‑50 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc > 1:5037385‑M2/21‑48 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:3534997‑M2/30‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:35260‑M2/30‑1 (MQ=255) aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCa < 1:5069517‑M2/30‑1 (MQ=255) ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg < 1:5544779‑M2/31‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:2705754‑M2/32‑1 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc > 1:5387410‑M2/19‑50 (MQ=255) gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc < 1:1093269‑M2/32‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:7025153‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:1700793‑M2/18‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:7501473‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:1109191‑M2/18‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:784667‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:6306697‑M2/33‑1 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt > 1:7880181‑M2/18‑50 (MQ=255) aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt < 1:2600353‑M2/33‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:6422368‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:8263753‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg > 1:3854145‑M2/17‑50 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:5635437‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg < 1:3082714‑M2/34‑1 (MQ=255) aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg > 1:2890447‑M2/17‑50 (MQ=255) aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg < 1:2732404‑M2/35‑1 (MQ=255) aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg < 1:892409‑M2/35‑1 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt < 1:1999784‑M2/36‑1 (MQ=255) aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt < 1:84325‑M2/36‑1 (MQ=255) atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc < 1:1314408‑M2/37‑1 (MQ=255) atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt > 1:3434648‑M2/12‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:3369483‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt < 1:1274553‑M2/40‑1 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt > 1:1446610‑M2/11‑50 (MQ=255) tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt < 1:4707007‑M2/39‑1 (MQ=255) cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc > 1:2155578‑M2/10‑50 (MQ=255) agtgtggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc < 1:7092293‑M2/41‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt < 1:7176822‑M2/42‑1 (MQ=255) agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:1516196‑M2/9‑50 (MQ=255) gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt < 1:2436325‑M2/43‑1 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt > 1:7708076‑M2/7‑48 (MQ=255) tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa < 1:4199519‑M2/44‑1 (MQ=255) atggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag > 1:1670515‑M2/6‑50 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 1:2729826‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 1:4560131‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagc < 1:4916637‑M2/46‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:447734‑M2/45‑1 (MQ=255) tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag < 1:7300375‑M2/45‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:4221878‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag < 1:5353436‑M2/48‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:8169273‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:2834090‑M2/47‑1 (MQ=255) gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagca < 1:905710‑M2/47‑1 (MQ=255) cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc < 1:5130102‑M2/49‑1 (MQ=255) | TAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGC > NC_000913/3770195‑3770291 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |