| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 98 [0] | [0] 98 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 93 (0.970) +GA |
53/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
Only 100 of 103 total aligned reads displayed.
CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG < 1:3111876/50‑1 atGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:3605138/3‑49 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:3206262/1‑49 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:2874758/1‑49 AGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAG > 1:582937/1‑49 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:2306814/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC > 1:2270179/1‑50 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:3158983/50‑1 GCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAAC < 1:3808821/50‑1 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:1335269/1‑50 CTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACG > 1:2075595/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:3641184/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:2599220/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:3562325/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:1454419/1‑50 TTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGC > 1:6055799/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:274079/1‑50 CTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA > 1:1505513/1‑50 TCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑T > 1:746792/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTT > 1:7174783/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTT > 1:6761382/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTT > 1:7467658/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTT > 1:5868167/1‑50 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:5496633/47‑1 AGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA < 1:7214195/47‑1 GCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTT < 1:3893233/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTG < 1:393140/50‑1 CAGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTG < 1:6014313/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGA < 1:2194551/50‑1 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTG > 1:7156160/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTG > 1:5286881/1‑49 AGCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTG > 1:1312336/1‑49 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAA < 1:3571028/50‑1 GCACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAA < 1:1551293/50‑1 CACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAAT > 1:6182551/1‑50 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATT > 1:2816430/1‑50 ACTGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATT < 1:2716531/50‑1 TGACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTA > 1:2084385/1‑50 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTAC > 1:736863/1‑50 GACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTAC > 1:7049933/1‑50 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACG < 1:3240058/50‑1 ACATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACG < 1:3022247/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAA > 1:1927487/1‑50 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAA < 1:6708729/50‑1 ATCAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAA > 1:2570296/1‑50 CAATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACG > 1:710179/1‑50 AATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACG > 1:6620960/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACG > 1:7006699/1‑49 AATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACG < 1:1565469/49‑1 ATTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGA > 1:359697/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC < 1:2536790/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC < 1:5701919/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC < 1:3100672/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC < 1:5609725/50‑1 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC > 1:5152076/1‑50 TTTGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGAC < 1:7316856/50‑1 TGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACG > 1:3279700/1‑49 TGTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACG < 1:61666/49‑1 GTGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGC < 1:1918821/49‑1 TGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCAT < 1:6445146/50‑1 TGTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCAT > 1:5661623/1‑50 GTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCAT > 1:636008/1‑49 GTCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCAT > 1:568994/1‑49 TCACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTA < 1:1449018/50‑1 CACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTAT > 1:656367/1‑50 CACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTAT > 1:7011742/1‑50 ACCCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATC < 1:816772/50‑1 CCCGCAGCGCATAGAACGCCATTTTTGAATTTACGAACGGACGCATTAT > 1:4076442/1‑49 CCGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAG > 1:3626547/1‑50 CGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGT > 1:5556671/1‑50 CGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGT > 1:5127246/1‑50 CGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGT < 1:3880416/50‑1 CGCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACAGACGCATTATCAGT > 1:904489/1‑50 GCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGT > 1:6563002/1‑49 GCAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGT > 1:4048982/1‑49 CAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:6722335/50‑1 CAGCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGA < 1:6139439/50‑1 GCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACT < 1:858265/50‑1 GCGCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACT > 1:5648193/1‑50 GCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTT < 1:4787871/50‑1 GCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:2134131/1‑49 GCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:5175494/1‑49 GCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:3170712/1‑49 GCATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTT > 1:7245255/1‑49 CATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:5977146/1‑49 CATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:6367568/1‑49 CATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTT > 1:4581311/1‑49 ATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:4214386/1‑50 ATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA < 1:134985/50‑1 ATAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAA > 1:6820177/1‑50 TAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:2237994/1‑50 TAGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAC > 1:1093651/1‑50 AGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:3912193/1‑50 AGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:3374048/1‑50 AGAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG > 1:565319/1‑50 GAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGG > 1:3737886/1‑50 GAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:4043976/49‑1 GAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:5598408/49‑1 GAACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACG < 1:1322526/49‑1 AACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC < 1:5339531/50‑1 || CAGGCTTCTCAGCAGCACTGACATCAATTTGTGTCACCCGCAGCGCATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3110631‑3110679‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136382‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |