| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,110,680 | 25702 bp→GA | [yghD]–pitB | 20 genes [yghD], yghE, yghF, yghG, pppA, yghJ, glcA, glcB, glcG, glcF, glcE, glcD, glcC, yghO, insH‑9, yghQ, yghR, yghS, yghT, pitB |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3110680 | 3136381 | 25702 | 98 [0] | [0] 98 | [yghD]–pitB | [yghD],yghE,yghF,yghG,pppA,yghJ,glcA,glcB,glcG,glcF,glcE,glcD,glcC,yghO,insH‑9,yghQ,yghR,yghS,yghT,pitB |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3110679 | 0 (0.000) | 93 (0.970) +GA |
53/94 | 0.0 | 100% | coding (448/537 nt) | yghD | putative type II secretion system M‑type protein |
| ? | NC_000913 | 3136382 = | 0 (0.000) | intergenic (‑11/+281) | pitB/gss | metal phosphate:H(+) symporter PitB/fused glutathionylspermidine amidase/glutathionylspermidine synthetase | |||||
CCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136334‑3136430 | gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:2306814‑M2/2‑1 (MQ=255)gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc > 1:2270179‑M2/49‑50 (MQ=255)gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:3158983‑M2/2‑1 (MQ=255)gcttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaAc < 1:3808821‑M2/2‑1 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:1335269‑M2/48‑50 (MQ=255) cttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACg > 1:2075595‑M2/48‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:3641184‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:2599220‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:3562325‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:1454419‑M2/47‑50 (MQ=255) ttctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGc > 1:6055799‑M2/47‑50 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa > 1:1505513‑M2/45‑50 (MQ=255) ctcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa > 1:274079‑M2/45‑50 (MQ=255) tcagcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑t > 1:746792‑M2/44‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:7214195‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCa < 1:5496633‑M2/6‑1 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑ttt > 1:5868167‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑ttt > 1:7174783‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑ttt > 1:6761382‑M2/42‑50 (MQ=255) agcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑ttt > 1:7467658‑M2/42‑50 (MQ=255) gcagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑tttt < 1:3893233‑M2/10‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTg < 1:393140‑M2/11‑1 (MQ=255) cagcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTg < 1:6014313‑M2/11‑1 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTg > 1:7156160‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTg > 1:1312336‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTg > 1:5286881‑M2/39‑49 (MQ=255) agcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGa < 1:2194551‑M2/12‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGaa > 1:5709129‑M2/38‑50 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGaa < 1:1551293‑M2/13‑1 (MQ=255) gcactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGaa < 1:3571028‑M2/13‑1 (MQ=255) cactgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAAt > 1:6182551‑M2/37‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAAtt > 1:2816430‑M2/36‑50 (MQ=255) actgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAAtt < 1:2716531‑M2/15‑1 (MQ=255) tgacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTa > 1:2084385‑M2/34‑50 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTAc > 1:7049933‑M2/33‑50 (MQ=255) gacatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTAc > 1:736863‑M2/33‑50 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACg < 1:3240058‑M2/19‑1 (MQ=255) acatcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACg < 1:3022247‑M2/19‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGaa < 1:6708729‑M2/21‑1 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGaa > 1:2570296‑M2/30‑50 (MQ=255) atcaatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGaa > 1:1927487‑M2/30‑50 (MQ=255) caatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACg > 1:710179‑M2/28‑50 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACg < 1:1565469‑M2/23‑1 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACg > 1:6620960‑M2/27‑49 (MQ=255) aatttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACg > 1:7006699‑M2/27‑49 (MQ=255) atttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGa > 1:359697‑M2/26‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc < 1:5701919‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc > 1:5152076‑M2/25‑50 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc < 1:2536790‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc < 1:3100672‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc < 1:7316856‑M2/26‑1 (MQ=255) tttgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGAc < 1:5609725‑M2/26‑1 (MQ=255) tgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACg > 1:3279700‑M2/23‑49 (MQ=255) tgtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACg < 1:61666‑M2/27‑1 (MQ=255) gtgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGc < 1:1918821‑M2/28‑1 (MQ=255) tgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCAt > 1:5661623‑M2/21‑50 (MQ=255) tgtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCAt < 1:6445146‑M2/30‑1 (MQ=255) gtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCAt > 1:636008‑M2/20‑49 (MQ=255) gtcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCAt > 1:568994‑M2/20‑49 (MQ=255) tcacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTa < 1:1449018‑M2/32‑1 (MQ=255) cacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTAt > 1:656367‑M2/18‑50 (MQ=255) cacccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTAt > 1:7011742‑M2/18‑50 (MQ=255) acccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATc < 1:816772‑M2/34‑1 (MQ=255) cccgcagcgcatagaACGCCATTTTTGAATTTACGAACGGACGCATTAt > 1:4076442‑M2/16‑49 (MQ=255) ccgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAg > 1:3626547‑M2/15‑50 (MQ=255) cgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt > 1:930885‑M2/14‑50 (MQ=255) cgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt > 1:5556671‑M2/14‑50 (MQ=255) cgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt > 1:5127246‑M2/14‑50 (MQ=255) cgcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt < 1:3880416‑M2/37‑1 (MQ=255) cgcagcgcatagaACGCCA‑TTTTGAATTTACGAACAGACGCATTATCAGt > 1:904489‑M2/14‑50 (MQ=255) gcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt > 1:4048982‑M2/13‑49 (MQ=255) gcagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGt > 1:6563002‑M2/13‑49 (MQ=255) cagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:6139439‑M2/39‑1 (MQ=255) cagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGa > 1:3339286‑M2/12‑50 (MQ=255) cagcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGa < 1:6722335‑M2/39‑1 (MQ=255) gcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACt > 1:5648193‑M2/10‑50 (MQ=255) gcgcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACt < 1:858265‑M2/41‑1 (MQ=255) gcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACttt < 1:4787871‑M2/43‑1 (MQ=255) gcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:5175494‑M2/8‑49 (MQ=255) gcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:2134131‑M2/8‑49 (MQ=255) gcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:3170712‑M2/8‑49 (MQ=255) gcatagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACtt > 1:7245255‑M2/8‑49 (MQ=255) catagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:4581311‑M2/7‑49 (MQ=255) catagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:6367568‑M2/7‑49 (MQ=255) catagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACttt > 1:5977146‑M2/7‑49 (MQ=255) atagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa < 1:134985‑M2/45‑1 (MQ=255) atagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:6820177‑M2/6‑50 (MQ=255) atagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTaa > 1:4214386‑M2/6‑50 (MQ=255) tagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:2237994‑M2/5‑50 (MQ=255) tagaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAAc > 1:1093651‑M2/5‑50 (MQ=255) agaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:3374048‑M2/4‑50 (MQ=255) agaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:3912193‑M2/4‑50 (MQ=255) agaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg > 1:565319‑M2/4‑50 (MQ=255) gaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACgg > 1:3737886‑M2/3‑50 (MQ=255) gaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:4043976‑M2/47‑1 (MQ=255) gaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:1322526‑M2/47‑1 (MQ=255) gaACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACg < 1:5598408‑M2/47‑1 (MQ=255) aACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGc < 1:5339531‑M2/49‑1 (MQ=255) | CCTGTGTATATATCAAGGCCAACAAATAAATTTAGCATATATTAGATTACGCCA‑TTTTGAATTTACGAACGGACGCATTATCAGTGACTTTAACGGC > NC_000913/3136334‑3136430 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |