| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,496,676 | Δ53,036 bp | intB–fimH | 54 genes intB, insC‑6, insD‑6, yjgX, yjgZ, insG, yjhB, yjhC, ythA, yjhD, yjhE, insO, insI‑3, insO, insO, yjhV, fecE, fecD, fecC, fecB, fecA, fecR, fecI, insA‑7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, yjhZ, yjhR, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4496676 | 4549711 | 53036 | 139 [0] | [0] 137 | intB–fimH | intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4496675 | 0 (0.000) | 134 (1.370) | 70/96 | 0.0 | 100% | intergenic (+186/‑75) | leuX/intB | tRNA‑Leu/KpLE2 phage‑like element; putative integrase |
| ? | NC_000913 | 4549712 = | 0 (0.000) | intergenic (+2/+241) | fimH/gntP | type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter | |||||
Only 100 of 139 total aligned reads displayed.
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:6934089/49‑1ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA < 1:2804099/49‑1 TGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGA < 1:1747613/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA < 1:3768787/50‑1 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:2177255/1‑50 GTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAA > 1:1889068/1‑50 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:1039804/50‑1 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:6566277/1‑50 TATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT < 1:4623205/50‑1 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:5401622/1‑49 ATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAAT > 1:4799808/1‑49 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:2040006/1‑50 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA < 1:3299307/50‑1 TTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATC < 1:1685565/49‑1 TCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCA > 1:5425067/1‑48 CCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACA < 1:3476466/49‑1 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:6794080/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:6339478/1‑50 GGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA < 1:5201948/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:1672406/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGAC < 1:367410/50‑1 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:1521888/1‑49 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:2993322/1‑49 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:273326/1‑49 GTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGA > 1:2618521/1‑49 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA > 1:1454198/1‑50 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:3766659/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:7133742/50‑1 TTCGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACA < 1:3288517/50‑1 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:7430792/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:4152614/1‑50 CGATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT > 1:2037145/1‑50 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTG < 1:597168/50‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:7008111/49‑1 GATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATT < 1:4318296/49‑1 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:5637561/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:6644291/1‑50 ATAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGC > 1:1809665/1‑50 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:2172209/50‑1 TAATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCT < 1:5318429/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:6575323/50‑1 ATGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAA < 1:4257842/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:6145912/50‑1 TGCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAAT < 1:4357609/50‑1 GCTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG > 1:1049514/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGC > 1:1016514/1‑50 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:2720870/49‑1 CTTGTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATG < 1:3171378/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:6805363/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG > 1:1152476/1‑50 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:2385397/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTG < 1:1342774/49‑1 GTACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCT < 1:4866953/48‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGT < 1:3777665/50‑1 TACCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGG < 1:4774789/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC > 1:3160693/1‑50 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTAC < 1:1333937/50‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:5511461/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:4482142/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:2399796/49‑1 CCAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTA < 1:5281132/49‑1 CAACAGGGAGGGAATGCGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:2492220/50‑1 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:7458784/1‑50 CAACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG < 1:6088973/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGC < 1:3509127/50‑1 AACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACG > 1:389474/1‑49 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:7269406/50‑1 ACAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCA < 1:7063273/50‑1 CAGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAA < 1:2861066/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:6451786/50‑1 AGGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAAT < 1:2484035/50‑1 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA > 1:1625747/1‑50 GGGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATA < 1:3227775/50‑1 GGAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:6472548/1‑50 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:4303452/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATT < 1:3377492/50‑1 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:4451402/1‑49 GAGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATAT > 1:3506587/1‑49 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA < 1:1640072/50‑1 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:4535875/1‑50 AGGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTA > 1:3425220/1‑50 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC > 1:3690631/1‑50 GGGAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTAC < 1:2872696/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:5518407/50‑1 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:7160822/1‑50 GAATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT < 1:7449405/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:901968/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTG < 1:2271702/50‑1 AATACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCT > 1:876782/1‑49 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:5858769/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:3803654/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:3405448/50‑1 TACGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAA < 1:2152319/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:2963833/1‑50 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC < 1:1657981/50‑1 CGAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAG < 1:261598/49‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:6759588/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCT < 1:257321/50‑1 GAGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGC > 1:7315168/1‑49 AGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA < 1:487470/50‑1 ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4496627‑4496675‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGAAATCACAGGACATTGCTAATGCTGGTACGCAATATTACCTGAAGCTA > NC_000913/4549712‑4549760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |