Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 4,496,676 Δ53,036 bp intB–fimH 54 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 4496676 4549711 53036 139 [0] [0] 137 intB–fimH intB,insC‑6,insD‑6,yjgX,yjgZ,insG,yjhB,yjhC,ythA,yjhD,yjhE,insO,insI‑3,insO,insO,yjhV,fecE,fecD,fecC,fecB,fecA,fecR,fecI,insA‑7,yjhU,yjhF,yjhG,yjhH,yjhI,sgcR,sgcE,sgcA,ryjB,sgcQ,sgcC,sgcB,sgcX,yjhP,yjhQ,topAI,yjhZ,yjhR,nanS,nanM,nanC,fimB,fimE,fimA,fimI,fimC,fimD,fimF,fimG,fimH

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 44966750 (0.000)134 (1.370) 70/96 0.0 100% intergenic (+186/‑75) leuX/intB tRNA‑Leu/KpLE2 phage‑like element; putative integrase
?NC_000913 4549712 = 0 (0.000)intergenic (+2/+241) fimH/gntP type 1 fimbriae D‑mannose specific adhesin/fructuronate transporter

Only 100 of 139 total aligned reads displayed.

ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGCA  >  NC_000913/4496627‑4496724
                                                |                                                 
aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA                                                   <  1:6934089‑M1/49‑1 (MQ=255)
aTGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGA                                                   <  1:2804099‑M1/49‑1 (MQ=255)
 tGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAga                                                 <  1:1747613‑M1/50‑3 (MQ=255)
   gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaa                                               <  1:3768787‑M1/50‑5 (MQ=255)
   gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaa                                               >  1:2177255‑M1/1‑46 (MQ=255)
   gTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaa                                               >  1:1889068‑M1/1‑46 (MQ=255)
    tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat                                              <  1:1039804‑M1/50‑6 (MQ=255)
    tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat                                              >  1:6566277‑M1/1‑45 (MQ=255)
    tATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat                                              <  1:4623205‑M1/50‑6 (MQ=255)
     aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat                                              >  1:5401622‑M1/1‑44 (MQ=255)
     aTTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaat                                              >  1:4799808‑M1/1‑44 (MQ=255)
      tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca                                            >  1:2040006‑M1/1‑43 (MQ=255)
      tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca                                            <  1:3299307‑M1/50‑8 (MQ=255)
      tttCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatc                                             <  1:1685565‑M1/49‑7 (MQ=255)
        tCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatca                                            >  1:5425067‑M1/1‑41 (MQ=255)
         ccGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcaca                                          <  1:3476466‑M1/49‑10 (MQ=255)
           ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:6794080‑M1/1‑38 (MQ=255)
           ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:6339478‑M1/1‑38 (MQ=255)
           ggTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       <  1:5201948‑M1/50‑13 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggac                                      <  1:1672406‑M1/50‑14 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggac                                      <  1:367410‑M1/50‑14 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:1521888‑M1/1‑37 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:2993322‑M1/1‑37 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:273326‑M1/1‑37 (MQ=255)
            gTTCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacagga                                       >  1:2618521‑M1/1‑37 (MQ=255)
             ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca                                     >  1:1454198‑M1/1‑36 (MQ=255)
             ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca                                     <  1:3766659‑M1/50‑15 (MQ=255)
             ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca                                     <  1:7133742‑M1/50‑15 (MQ=255)
             ttCGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggaca                                     <  1:3288517‑M1/50‑15 (MQ=255)
               cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt                                   >  1:7430792‑M1/1‑34 (MQ=255)
               cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt                                   >  1:4152614‑M1/1‑34 (MQ=255)
               cGATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt                                   >  1:2037145‑M1/1‑34 (MQ=255)
                gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattg                                  <  1:597168‑M1/50‑18 (MQ=255)
                gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt                                   <  1:7008111‑M1/49‑17 (MQ=255)
                gATAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacatt                                   <  1:4318296‑M1/49‑17 (MQ=255)
                 aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc                                 >  1:5637561‑M1/1‑32 (MQ=255)
                 aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc                                 >  1:6644291‑M1/1‑32 (MQ=255)
                 aTAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgc                                 >  1:1809665‑M1/1‑32 (MQ=255)
                  tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct                                <  1:2172209‑M1/50‑20 (MQ=255)
                  tAATGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgct                                <  1:5318429‑M1/50‑20 (MQ=255)
                    aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa                              <  1:6575323‑M1/50‑22 (MQ=255)
                    aTGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaa                              <  1:4257842‑M1/50‑22 (MQ=255)
                     tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat                             <  1:6145912‑M1/50‑23 (MQ=255)
                     tGCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaat                             <  1:4357609‑M1/50‑23 (MQ=255)
                      gCTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg                            >  1:1049514‑M1/1‑27 (MQ=255)
                       cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgc                           >  1:1016514‑M1/1‑26 (MQ=255)
                       cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg                            <  1:2720870‑M1/49‑24 (MQ=255)
                       cTTGTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatg                            <  1:3171378‑M1/49‑24 (MQ=255)
                          gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg                        >  1:6805363‑M1/1‑23 (MQ=255)
                          gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg                        >  1:1152476‑M1/1‑23 (MQ=255)
                          gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg                         <  1:2385397‑M1/49‑27 (MQ=255)
                          gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctg                         <  1:1342774‑M1/49‑27 (MQ=255)
                          gTACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgct                          <  1:4866953‑M1/48‑26 (MQ=255)
                           tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggt                       <  1:3777665‑M1/50‑29 (MQ=255)
                           tACCAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctgg                        <  1:4774789‑M1/49‑28 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac                     >  1:3160693‑M1/1‑20 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtac                     <  1:1333937‑M1/50‑31 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta                      <  1:5511461‑M1/49‑30 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta                      <  1:4482142‑M1/49‑30 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta                      <  1:2399796‑M1/49‑30 (MQ=255)
                             ccAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggta                      <  1:5281132‑M1/49‑30 (MQ=255)
                              cAACAGGGAGGGAATGCGAgaaatcacaggacattgctaatgctggtacg                    <  1:2492220‑M1/50‑32 (MQ=255)
                              cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg                    >  1:7458784‑M1/1‑19 (MQ=255)
                              cAACAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg                    <  1:6088973‑M1/50‑32 (MQ=255)
                               aaCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgc                   <  1:3509127‑M1/50‑33 (MQ=255)
                               aaCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacg                    >  1:389474‑M1/1‑18 (MQ=255)
                                aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca                  <  1:7269406‑M1/50‑34 (MQ=255)
                                aCAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgca                  <  1:7063273‑M1/50‑34 (MQ=255)
                                 cAGGGAGGGAATACGAgaaatcacaggacattgctaatgctggtacgcaa                 <  1:2861066‑M1/50‑35 (MQ=255)
                                  agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat                <  1:6451786‑M1/50‑36 (MQ=255)
                                  agggagggAATACGAgaaatcacaggacattgctaatgctggtacgcaat                <  1:2484035‑M1/50‑36 (MQ=255)
                                   gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata               >  1:1625747‑M1/1‑14 (MQ=255)
                                   gggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaata               <  1:3227775‑M1/50‑37 (MQ=255)
                                    ggagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat              >  1:6472548‑M1/1‑13 (MQ=255)
                                     gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt             <  1:4303452‑M1/50‑39 (MQ=255)
                                     gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatt             <  1:3377492‑M1/50‑39 (MQ=255)
                                     gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat              >  1:4451402‑M1/1‑12 (MQ=255)
                                     gagggaATACGAgaaatcacaggacattgctaatgctggtacgcaatat              >  1:3506587‑M1/1‑12 (MQ=255)
                                      agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta            <  1:1640072‑M1/50‑40 (MQ=255)
                                      agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta            >  1:4535875‑M1/1‑11 (MQ=255)
                                      agggaATACGAgaaatcacaggacattgctaatgctggtacgcaatatta            >  1:3425220‑M1/1‑11 (MQ=255)
                                       gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac           >  1:3690631‑M1/1‑10 (MQ=255)
                                       gggaATACGAgaaatcacaggacattgctaatgctggtacgcaatattac           <  1:2872696‑M1/50‑41 (MQ=255)
                                         gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct         <  1:5518407‑M1/50‑43 (MQ=255)
                                         gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct         >  1:7160822‑M1/1‑8 (MQ=255)
                                         gaATACGAgaaatcacaggacattgctaatgctggtacgcaatattacct         <  1:7449405‑M1/50‑43 (MQ=255)
                                          aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg        <  1:901968‑M1/50‑44 (MQ=255)
                                          aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacctg        <  1:2271702‑M1/50‑44 (MQ=255)
                                          aaTACGAgaaatcacaggacattgctaatgctggtacgcaatattacct         >  1:876782‑M1/1‑7 (MQ=255)
                                            tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa      <  1:5858769‑M1/50‑46 (MQ=255)
                                            tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa      <  1:3803654‑M1/50‑46 (MQ=255)
                                            tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa      <  1:3405448‑M1/50‑46 (MQ=255)
                                            tACGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaa      <  1:2152319‑M1/50‑46 (MQ=255)
                                              cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc    >  1:2963833‑M1/1‑3 (MQ=255)
                                              cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaagc    <  1:1657981‑M1/50‑48 (MQ=255)
                                              cGAgaaatcacaggacattgctaatgctggtacgcaatattacctgaag     <  1:261598‑M1/49‑47 (MQ=255)
                                               gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct   <  1:6759588‑M1/50‑49 (MQ=255)
                                               gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagct   <  1:257321‑M1/50‑49 (MQ=255)
                                               gagaaatcacaggacattgctaatgctggtacgcaatattacctgaagc    >  1:7315168‑M1/1‑2 (MQ=255)
                                                agaaatcacaggacattgctaatgctggtacgcaatattacctgaagcta  <  1:487470‑M1/50‑50 (MQ=255)
                                                |                                                 
ATGGTATTTCCGGTTCGATAATGCTTGTACCAACAGGGAGGGAATACGATGGCATTAACAGATATCAAAGTCAGAGCAGCCAAGCCAACGGATAAGCA  >  NC_000913/4496627‑4496724

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑