| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 117 [0] | [0] 113 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 107 (1.090) | 61/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 117 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:4728714/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTA < 1:1978279/50‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:5456213/49‑1TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:2093770/1‑49TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:7576963/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:6237768/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:7539636/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG > 1:1077142/1‑50 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:4880280/49‑1 TAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAA < 1:6178062/49‑1 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG > 1:3158667/1‑50 AGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAG < 1:3084366/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC < 1:5393385/50‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:393935/49‑1 GCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGG < 1:4940/49‑1 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:1940675/1‑49 CTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:5933466/1‑49 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:4141046/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:2934066/1‑48 TATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:1679929/1‑48 ATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGC > 1:4256990/1‑47 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:779081/49‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAG < 1:7087689/49‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA < 1:3295568/48‑1 TCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGA < 1:3385340/48‑1 CTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:5237972/1‑50 TGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT > 1:5079617/1‑49 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:732317/1‑50 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:2916023/1‑50 GTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTA > 1:1639383/1‑50 TATAACTTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:748725/46‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTAT > 1:7350706/1‑50 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:2182251/48‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATT < 1:1034668/48‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGAT < 1:1400671/47‑1 TATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGA < 1:1218803/46‑1 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT > 1:5730543/1‑49 TAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATT < 1:1860058/49‑1 AACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:1591901/1‑49 gCCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAA < 1:7520270/48‑1 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:204229/1‑48 ACCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTA > 1:6072960/1‑48 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:5253225/1‑50 CCTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAG > 1:941761/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:3931604/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:6031162/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:3664266/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:937762/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT < 1:4780998/50‑1 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:1703527/1‑50 CTGAATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGT > 1:7302467/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGC > 1:2031075/1‑50 AATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTG < 1:3684350/49‑1 ATGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCC < 1:6293005/50‑1 TGTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCA < 1:4742519/50‑1 GTTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT > 1:1049025/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATG > 1:7240831/1‑50 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:7520585/49‑1 TTAGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCAT < 1:4050720/49‑1 AGTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGC < 1:5044584/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAG < 1:6362700/50‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:7577212/49‑1 GTACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCA < 1:5339516/49‑1 GTACTCATTATTCCTGGTAGTAAGACGAGATTATTAAAGTTGCCATGCAG < 1:6356046/50‑1 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC > 1:4683992/1‑50 TACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGC < 1:340136/50‑1 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:5144272/1‑50 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:168651/1‑50 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:2869786/1‑50 ACTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG > 1:3303585/1‑50 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGT > 1:6670420/1‑50 CTCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCG < 1:1773864/49‑1 TCATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC > 1:5630605/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:4507859/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCG > 1:6533723/1‑50 ATTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTC < 1:4319159/48‑1 TTCTTCCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGG < 1:3878236/50‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAA < 1:5888664/49‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:5255716/47‑1 CCTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGG < 1:3561292/47‑1 CTGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGT < 1:5670085/50‑1 TGGTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTG > 1:6929082/1‑50 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:7200725/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:855460/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTT < 1:2855864/50‑1 GTAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGT < 1:4537936/49‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:6924139/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:1047306/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:833420/1‑50 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG < 1:4046037/50‑1 TAGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTG > 1:3981181/1‑50 AGTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG > 1:6445551/1‑50 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGG < 1:7205273/50‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:2541792/49‑1 GTAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGG < 1:27227/49‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:2430543/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:238402/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:1786506/50‑1 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > 1:3310286/1‑50 TAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC < 1:1159353/50‑1 TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4555442‑4555490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGC > NC_000913/4597014‑4597062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |