| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 117 [0] | [0] 113 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 107 (1.090) | 61/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 117 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:4728714‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:1978279‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:5456213‑M1/49‑1 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:2093770‑M1/1‑49 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:7576963‑M1/49‑1 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:6237768‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:7539636‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag > 1:1077142‑M1/1‑47 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:4880280‑M1/49‑3 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:6178062‑M1/49‑3 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:3158667‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:3084366‑M1/49‑4 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 1:5393385‑M1/50‑6 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg < 1:393935‑M1/49‑5 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg < 1:4940‑M1/49‑5 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1940675‑M1/1‑44 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:5933466‑M1/1‑44 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:4141046‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2934066‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1679929‑M1/1‑43 (MQ=255) aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:4256990‑M1/1‑42 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgag < 1:779081‑M1/49‑9 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgag < 1:7087689‑M1/49‑9 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcga < 1:3295568‑M1/48‑8 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcga < 1:3385340‑M1/48‑8 (MQ=255) cTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:5237972‑M1/1‑40 (MQ=255) tGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat > 1:5079617‑M1/1‑39 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:732317‑M1/1‑38 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:2916023‑M1/1‑38 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:1639383‑M1/1‑38 (MQ=255) tataACTTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga < 1:748725‑M1/46‑10 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:7350706‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:2182251‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:1034668‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagat < 1:1400671‑M1/47‑11 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga < 1:1218803‑M1/46‑10 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt > 1:5730543‑M1/1‑35 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:1860058‑M1/49‑15 (MQ=255) aaCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:1591901‑M1/1‑34 (MQ=255) gcctGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaa < 1:7520270‑M1/48‑17 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:204229‑M1/1‑33 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta > 1:6072960‑M1/1‑33 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag > 1:5253225‑M1/1‑32 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag > 1:941761‑M1/1‑32 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:3931604‑M1/50‑20 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:6031162‑M1/50‑20 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:3664266‑M1/50‑20 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:937762‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:4780998‑M1/50‑20 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:1703527‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:7302467‑M1/1‑31 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:2031075‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg < 1:3684350‑M1/49‑22 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc < 1:6293005‑M1/50‑24 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:4742519‑M1/50‑25 (MQ=255) gTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat > 1:1049025‑M1/1‑25 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:7240831‑M1/1‑24 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:7520585‑M1/49‑26 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:4050720‑M1/49‑26 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgc < 1:5044584‑M1/49‑28 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag < 1:6362700‑M1/50‑30 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:7577212‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:5339516‑M1/49‑29 (MQ=255) gTACTCATTATTCCTGGTAGTaagacgagattattaaagttgccatgcag < 1:6356046‑M1/50‑30 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 1:4683992‑M1/1‑20 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:340136‑M1/50‑31 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:5144272‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:168651‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:2869786‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:3303585‑M1/1‑19 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgt > 1:6670420‑M1/1‑18 (MQ=255) cTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg < 1:1773864‑M1/49‑32 (MQ=255) tCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc > 1:5630605‑M1/1‑17 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg > 1:4507859‑M1/1‑15 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccg > 1:6533723‑M1/1‑15 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtc < 1:4319159‑M1/48‑34 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg < 1:3878236‑M1/50‑37 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaa < 1:5888664‑M1/49‑41 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg < 1:5255716‑M1/47‑39 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg < 1:3561292‑M1/47‑39 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:5670085‑M1/50‑43 (MQ=255) tGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagtg > 1:6929082‑M1/1‑7 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:7200725‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:855460‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt < 1:2855864‑M1/50‑46 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 1:4537936‑M1/49‑45 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 1:6924139‑M1/50‑47 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 1:1047306‑M1/50‑47 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg > 1:833420‑M1/1‑4 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 1:4046037‑M1/50‑47 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg > 1:3981181‑M1/1‑4 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 1:6445551‑M1/1‑3 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg < 1:7205273‑M1/50‑49 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:2541792‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:27227‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:2430543‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:238402‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1786506‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc > 1:3310286‑M1/1‑1 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1159353‑M1/50‑50 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |