| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,761,993 | Δ8,250 bp | rhsA–yibV | rhsA, yibA, yibJ, yibG, yibS, yibV | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3761993 | 3770242 | 8250 | 134 [0] | [0] 132 | rhsA–yibV | rhsA,yibA,yibJ,yibG,yibS,yibV |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3761992 | 0 (0.000) | 127 (1.300) | 70/96 | 0.0 | 100% | intergenic (‑37/‑191) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA |
| ? | NC_000913 | 3770243 = | 0 (0.000) | coding (1137/1137 nt) | yibH | inner membrane protein YibH | |||||
Only 100 of 134 total aligned reads displayed.
CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 | cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:4883855‑M1/1‑50 (MQ=255)cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC > 1:226380‑M1/1‑50 (MQ=255)cgacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGC < 1:3813907‑M1/50‑1 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:4739456‑M1/50‑2 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt > 1:1342559‑M1/1‑49 (MQ=255) gacgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCt < 1:2483734‑M1/50‑2 (MQ=255) acgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtc < 1:5501144‑M1/50‑3 (MQ=255) cgaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtca < 1:2531758‑M1/50‑4 (MQ=255) cgaGTTTCATGCC‑AGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa < 1:1421250‑M1/50‑5 (MQ=255) gaGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaa > 1:1559333‑M1/1‑46 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:1686372‑M1/50‑6 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:6029742‑M1/50‑6 (MQ=255) aGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaat < 1:5981026‑M1/50‑6 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:6517729‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:1182130‑M1/50‑7 (MQ=255) gTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatg < 1:6581510‑M1/50‑7 (MQ=255) tttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatga < 1:71358‑M1/50‑8 (MQ=255) ttCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat > 1:5749864‑M1/1‑42 (MQ=255) tCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgat < 1:4252873‑M1/49‑9 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc < 1:6359121‑M1/49‑10 (MQ=255) cATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatc > 1:317774‑M1/1‑40 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:4395314‑M1/50‑12 (MQ=255) aTGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatcca < 1:267063‑M1/50‑12 (MQ=255) tGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCttaatgatccaa < 1:5301122‑M1/50‑13 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgttccaaa < 1:1232369‑M1/49‑14 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaat < 1:2115326‑M1/50‑15 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa > 1:1089317‑M1/1‑36 (MQ=255) ccGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaa < 1:3689200‑M1/49‑14 (MQ=255) aGTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaa < 1:7189071‑M1/50‑18 (MQ=255) gTCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaata > 1:318681‑M1/1‑32 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:2462356‑M1/50‑20 (MQ=255) tCCTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga < 1:1094618‑M1/50‑20 (MQ=255) ccTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaaga > 1:2725437‑M1/1‑30 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagata < 1:7008641‑M1/50‑22 (MQ=255) cTTTGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagat > 1:3481402‑M1/1‑29 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:4206755‑M1/1‑27 (MQ=255) ttGTGCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat > 1:5818457‑M1/1‑27 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataat < 1:2411578‑M1/49‑24 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:4852900‑M1/48‑23 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:5993525‑M1/48‑23 (MQ=255) tgtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataa < 1:38809‑M1/48‑23 (MQ=255) gtgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatg < 1:338258‑M1/49‑25 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca < 1:4346215‑M1/50‑27 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgca > 1:1779180‑M1/1‑24 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:6970546‑M1/49‑26 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:6782974‑M1/49‑26 (MQ=255) tgCGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgc < 1:3441224‑M1/49‑26 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:1408514‑M1/1‑22 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:403447‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:4220441‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:428155‑M1/49‑28 (MQ=255) cGAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcat < 1:336544‑M1/49‑28 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:2253579‑M1/1‑21 (MQ=255) gAGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:3526517‑M1/1‑21 (MQ=255) aGGAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatc > 1:537725‑M1/1‑20 (MQ=255) ggAAAAATATCAGTATGGCtcaatgatccaaataaagataatgcatccag < 1:6566394‑M1/50‑32 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:2970218‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:4468139‑M1/50‑34 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct > 1:4079664‑M1/1‑17 (MQ=255) aaaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagct < 1:4733012‑M1/50‑34 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:4512829‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:5217822‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctg > 1:3263135‑M1/1‑16 (MQ=255) aaaaTATCAGTATGGCtcaatgatccaaataaagataaagcatccagctg < 1:5950940‑M1/50‑35 (MQ=255) aaaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctgg > 1:2279417‑M1/1‑15 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:6913145‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:7367273‑M1/1‑14 (MQ=255) aaTATCAGTATGGCtcaatgatccaaataaagataatgcatccagctggt > 1:6719842‑M1/1‑14 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:120600‑M1/50‑38 (MQ=255) atatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtc < 1:4132498‑M1/50‑38 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca < 1:6766181‑M1/50‑39 (MQ=255) tatCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtca > 1:7243381‑M1/1‑12 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat > 1:5740065‑M1/1‑11 (MQ=255) atCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat > 1:4981962‑M1/1‑11 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt > 1:4681275‑M1/1‑10 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt > 1:1009024‑M1/1‑10 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcatt < 1:7148761‑M1/50‑41 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:786533‑M1/49‑40 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:6491276‑M1/49‑40 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:2290985‑M1/49‑40 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:5605233‑M1/49‑40 (MQ=255) tCAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcat < 1:6030149‑M1/49‑40 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:3738927‑M1/1‑9 (MQ=255) cAGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc > 1:6057468‑M1/1‑9 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct < 1:6315801‑M1/50‑43 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2689551‑M1/1‑8 (MQ=255) aGTATGGCtcaatgatccaaataaagataatgcatccagctggtcattc < 1:2956824‑M1/49‑42 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattctt < 1:7110868‑M1/50‑44 (MQ=255) gTATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:2058070‑M1/1‑7 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:2593703‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:2525838‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattctta < 1:7606463‑M1/50‑45 (MQ=255) tATGGCtcaatgatccaaataaagataatgcatccagctggtcattct > 1:7425783‑M1/1‑6 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttagc < 1:2689008‑M1/50‑47 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:3849757‑M1/49‑46 (MQ=255) tGGCtcaatgatccaaataaagataatgcatccagctggtcattcttag < 1:5650491‑M1/49‑46 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcagc < 1:3153504‑M1/50‑50 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcagc < 1:7376811‑M1/50‑50 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:3709892‑M1/1‑1 (MQ=255) ctcaatgatccaaataaagataatgcatccagctggtcattcttagcag > 1:7290631‑M1/1‑1 (MQ=255) | CGACGAGTTTCATGCCGAGTCCTTTGTGCGAGGAAAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAA > NC_000913/3761943‑3762041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |