BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	3,761,993	Δ8,250 bp		rhsA–yibV	rhsA, yibA, yibJ, yibG, yibS, yibV

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	3761993	3770242	8250	134 [0]	[0] 132	rhsA–yibV	rhsA,yibA,yibJ,yibG,yibS,yibV

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3761992	0 (0.000)	127 (1.300)	70/96	0.0	100%	intergenic (‑37/‑191)	yibF/rhsA	glutathione transferase‑like protein YibF/rhs element protein RhsA
*	?	NC_000913	3770243 =	0 (0.000)	127 (1.300)	70/96	0.0	100%	coding (1137/1137 nt)	yibH	inner membrane protein YibH

Only 100 of 132 total aligned reads displayed.

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA  >  NC_000913/3770194‑3770292

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                   <  1:2483734‑M2/1‑1 (MQ=255)

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                   <  1:4739456‑M2/1‑1 (MQ=255)

gacgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggct                                                   <  1:5155519‑M2/1‑1 (MQ=255)

 acgagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTc                                                  <  1:5501144‑M2/2‑1 (MQ=255)

   gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa                                                >  1:1311270‑M2/47‑50 (MQ=255)

   gagtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCaa                                                <  1:2369716‑M2/4‑1 (MQ=255)

   cgagtttcatgccagtcctttgtgcgaggaaaaatatcagtatggcTCaa                                                <  1:1421250‑M2/4‑1 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                               <  1:6029742‑M2/5‑1 (MQ=255)

    agtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAAt                                               <  1:1686372‑M2/5‑1 (MQ=255)

     gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg                                              <  1:6517729‑M2/6‑1 (MQ=255)

     gtttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATg                                              <  1:3397027‑M2/6‑1 (MQ=255)

      tttcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGa                                             <  1:71358‑M2/7‑1 (MQ=255)

        tcatgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGAt                                            <  1:4252873‑M2/8‑1 (MQ=255)

         catgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATc                                           <  1:6359121‑M2/9‑1 (MQ=255)

          atgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCa                                         <  1:267063‑M2/11‑1 (MQ=255)

           tgccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaa                                        <  1:5733720‑M2/12‑1 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGTTCCaaa                                       <  1:1232369‑M2/13‑1 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                       >  1:1089317‑M2/37‑49 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCaaa                                       <  1:3689200‑M2/13‑1 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt                                      <  1:2115326‑M2/14‑1 (MQ=255)

             ccgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAAt                                      <  1:6656699‑M2/14‑1 (MQ=255)

              cgagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                     <  1:6848641‑M2/15‑1 (MQ=255)

               gagtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaa                                    <  1:4025432‑M2/16‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                   <  1:4561210‑M2/17‑1 (MQ=255)

                agtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATaaa                                   <  1:7189071‑M2/17‑1 (MQ=255)

                 gtcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATa                                     >  1:318681‑M2/33‑47 (MQ=255)

                  tcctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                 <  1:1094618‑M2/19‑1 (MQ=255)

                   cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                 >  1:2725437‑M2/31‑49 (MQ=255)

                   cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                 >  1:7153086‑M2/31‑49 (MQ=255)

                   cctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGa                                 >  1:2262820‑M2/31‑49 (MQ=255)

                    ctttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGAt                                <  1:3114615‑M2/20‑1 (MQ=255)

                      ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             >  1:5818457‑M2/28‑50 (MQ=255)

                      ttgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             >  1:4206755‑M2/28‑50 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                              <  1:5993525‑M2/22‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATaa                              <  1:1155089‑M2/22‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             <  1:2411578‑M2/23‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAAt                             <  1:6509389‑M2/23‑1 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            >  1:6021254‑M2/27‑50 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            >  1:1972109‑M2/27‑50 (MQ=255)

                       tgtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            >  1:7583185‑M2/27‑50 (MQ=255)

                        gtgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATg                            <  1:338258‑M2/24‑1 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc                           <  1:3441224‑M2/25‑1 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGc                           <  1:6970546‑M2/25‑1 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa                          >  1:1779180‑M2/25‑50 (MQ=255)

                         tgcgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCa                          <  1:4346215‑M2/26‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                         <  1:4220441‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                         <  1:428155‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCAt                         <  1:403447‑M2/27‑1 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:2510715‑M2/23‑50 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:1408514‑M2/23‑50 (MQ=255)

                           cgaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:4189161‑M2/23‑50 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATcc                       <  1:3591758‑M2/29‑1 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:3526517‑M2/22‑49 (MQ=255)

                            gaggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:2253579‑M2/22‑49 (MQ=255)

                             aggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATc                        >  1:537725‑M2/21‑48 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     <  1:6566394‑M2/31‑1 (MQ=255)

                              ggaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAg                     >  1:5404415‑M2/20‑50 (MQ=255)

                               gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc                    <  1:5908188‑M2/32‑1 (MQ=255)

                               gaaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGc                    >  1:3257070‑M2/19‑50 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                   <  1:4468139‑M2/33‑1 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                   >  1:4079664‑M2/18‑50 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                   <  1:2970218‑M2/33‑1 (MQ=255)

                                aaaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCt                   <  1:4733012‑M2/33‑1 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  >  1:4512829‑M2/17‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  >  1:3263135‑M2/17‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTg                  >  1:5217822‑M2/17‑50 (MQ=255)

                                 aaaatatcagtatggcTCAATGATCCAAATAAAGATAAAGCATCCAGCTg                  <  1:5950940‑M2/34‑1 (MQ=255)

                                  aaatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTgg                 <  1:7349879‑M2/35‑1 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                >  1:6719842‑M2/15‑50 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                >  1:7367273‑M2/15‑50 (MQ=255)

                                   aatatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGt                >  1:6913145‑M2/15‑50 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:3787916‑M2/37‑1 (MQ=255)

                                    atatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTc               <  1:120600‑M2/37‑1 (MQ=255)

                                     tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa              >  1:7243381‑M2/13‑50 (MQ=255)

                                     tatcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCa              <  1:6766181‑M2/38‑1 (MQ=255)

                                      atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             >  1:5740065‑M2/12‑50 (MQ=255)

                                      atcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             >  1:4981962‑M2/12‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt            >  1:1009024‑M2/11‑50 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAtt            <  1:437846‑M2/40‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             <  1:786533‑M2/39‑1 (MQ=255)

                                       tcagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCAt             <  1:2290985‑M2/39‑1 (MQ=255)

                                        cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           >  1:6057468‑M2/10‑50 (MQ=255)

                                        cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           >  1:3738927‑M2/10‑50 (MQ=255)

                                        cagtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTc           >  1:7018616‑M2/10‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          <  1:6315801‑M2/42‑1 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:1534695‑M2/9‑50 (MQ=255)

                                         agtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCt          >  1:2689551‑M2/9‑50 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt         <  1:6066513‑M2/43‑1 (MQ=255)

                                          gtatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCtt         <  1:7110868‑M2/43‑1 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa        <  1:2525838‑M2/44‑1 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa        <  1:7606463‑M2/44‑1 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa        <  1:2593703‑M2/44‑1 (MQ=255)

                                           tatggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTa        <  1:2602613‑M2/44‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       <  1:2718965‑M2/45‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       <  1:3849757‑M2/45‑1 (MQ=255)

                                             tggcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTag       <  1:5650491‑M2/45‑1 (MQ=255)

                                               gcTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcag    >  1:4827019‑M2/3‑50 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc   <  1:3153504‑M2/49‑1 (MQ=255)

                                                cTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTagcagc   <  1:7376811‑M2/49‑1 (MQ=255)

                                                 tcAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAgcagca  >  1:279326/1‑50 (MQ=255)

ATAATTAGTCCTTACAAGGAGCAAAGTTCCATAATCTCCCCCCTCCCCCTCAATGATCCAAATAAAGATAATGCATCCAGCTGGTCATTCTTAGCAGCA  >  NC_000913/3770194‑3770292

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.