| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,994,992 | Δ3,877 bp | [ygeL]–ygeQ | [ygeL], ygeN, ygeO, insD‑4, insC‑4, ygeP, ygeQ | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2994992 | 2998868 | 3877 | 144 [0] | [0] 144 | [ygeL]–ygeQ | [ygeL],ygeN,ygeO,insD‑4,insC‑4,ygeP,ygeQ |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2994991 | 0 (0.000) | 138 (1.440) | 70/94 | 0.0 | 100% | pseudogene (102/156 nt) | ygeL | protein YgeL |
| ? | NC_000913 | 2998869 = | 0 (0.000) | intergenic (‑41/+115) | ygeQ/glyU | protein YgeQ/tRNA‑Gly | |||||
Only 100 of 144 total aligned reads displayed.
CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCC > NC_000913/2994942‑2995040 | cTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCC < 1:6254119‑M1/50‑1 (MQ=255) tGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCa > 1:6023526‑M1/1‑49 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:2796887‑M1/1‑47 (MQ=255) tAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCac < 1:6643947‑M1/49‑3 (MQ=255) aGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCact > 1:3791593‑M1/1‑46 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:4793142‑M1/50‑6 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta > 1:6569209‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:935838‑M1/50‑6 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta > 1:2478289‑M1/1‑45 (MQ=255) gATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCactta < 1:2040847‑M1/50‑6 (MQ=255) aTTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttat > 1:2386893‑M1/1‑44 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:2032196‑M1/50‑8 (MQ=255) tttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt < 1:2351312‑M1/50‑8 (MQ=255) ttGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatt > 1:7519128‑M1/1‑42 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt > 1:1959387‑M1/1‑41 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt < 1:2737994‑M1/49‑9 (MQ=255) tGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattt < 1:1292083‑M1/49‑9 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:4689950‑M1/1‑40 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:4325838‑M1/49‑10 (MQ=255) gTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttattta < 1:5762520‑M1/49‑10 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaac < 1:1400188‑M1/50‑12 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaac < 1:1591802‑M1/50‑12 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:3045174‑M1/49‑11 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:3805408‑M1/49‑11 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa < 1:5087991‑M1/49‑11 (MQ=255) ttACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaa > 1:4720002‑M1/1‑39 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:6945753‑M1/49‑13 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:4618265‑M1/49‑13 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaca < 1:5293059‑M1/49‑13 (MQ=255) acacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaaaa < 1:1134158‑M1/49‑13 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:6068946‑M1/49‑14 (MQ=255) cacTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaa < 1:351653‑M1/49‑14 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:100011‑M1/50‑16 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact > 1:217785‑M1/1‑35 (MQ=255) acTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaact < 1:6817085‑M1/50‑16 (MQ=255) cTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt < 1:410187‑M1/50‑17 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt > 1:1458844‑M1/1‑33 (MQ=255) tCCGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaactt > 1:7075769‑M1/1‑33 (MQ=255) ccGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg > 1:6507526‑M1/1‑32 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:4872445‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa < 1:1519846‑M1/50‑20 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttga < 1:1758674‑M1/49‑19 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg < 1:3988717‑M1/48‑18 (MQ=255) cGCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttg < 1:4385143‑M1/48‑18 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaa < 1:6396533‑M1/50‑21 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaa < 1:5659913‑M1/50‑21 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaa < 1:3790344‑M1/50‑21 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa > 1:2795145‑M1/1‑30 (MQ=255) gCTATAGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaa > 1:6195735‑M1/1‑30 (MQ=255) tataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaa > 1:5856509‑M1/1‑28 (MQ=255) ataGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:778957‑M1/1‑27 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaata < 1:3292453‑M1/49‑24 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:5952197‑M1/1‑26 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat < 1:6020015‑M1/48‑23 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat < 1:6397340‑M1/48‑23 (MQ=255) taGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaat > 1:5241240‑M1/1‑26 (MQ=255) aGCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataag > 1:3527933‑M1/1‑25 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg > 1:6698391‑M1/1‑24 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg > 1:1012323‑M1/1‑24 (MQ=255) gCTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataagg > 1:3424424‑M1/1‑24 (MQ=255) cTTTCTTCAGATCTTTATAGCCCacttatttaacaacttgaaaataaggt < 1:5903640‑M1/50‑28 (MQ=255) ttcttcAGATCTTTATAGCCCacttatttaacaactttaaaataaggtgt > 1:6798158‑M1/1‑21 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtt > 1:1674905‑M1/1‑20 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:94225‑M1/49‑30 (MQ=255) tcttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgt < 1:4237475‑M1/49‑30 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttt > 1:499813‑M1/1‑18 (MQ=255) ttcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggcgttt > 1:4343644‑M1/1‑18 (MQ=255) tcAGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgtttta > 1:3867097‑M1/1‑17 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:2566851‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:4652366‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:1970667‑M1/1‑15 (MQ=255) aGATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacc > 1:3678085‑M1/1‑15 (MQ=255) gATCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacct > 1:6876953‑M1/1‑14 (MQ=255) aTCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctg > 1:3634654‑M1/1‑13 (MQ=255) tCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctgg > 1:2892970‑M1/1‑12 (MQ=255) tCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctgg > 1:4715962‑M1/1‑12 (MQ=255) tCTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctgg > 1:4141536‑M1/1‑12 (MQ=255) cTTTATAGCCCacttatttaacaacttgaaaataaggtgttttacctggg > 1:5037987‑M1/1‑11 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:3375788‑M1/1‑10 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:2905717‑M1/1‑10 (MQ=255) tttATAGCCCacttatttaacaacttgaaaataaggtgttttacctgggt > 1:2366835‑M1/1‑10 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggtt < 1:3686194‑M1/49‑42 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgggt < 1:2143342‑M1/48‑41 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctgg < 1:5671864‑M1/46‑39 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:4042216‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:4807921‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgttttacctg < 1:6497097‑M1/45‑38 (MQ=255) tataGCCCacttatttaacaacttgaaaataaggtgtttt < 1:267569‑M1/40‑33 (MQ=255) ataGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt > 1:5481366‑M1/1‑7 (MQ=255) taGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgt < 1:4432154‑M1/49‑44 (MQ=255) aGCCCacttatttaacaacttgaaaataaggtgttttacctgggttgtta > 1:7025980‑M1/1‑5 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgttac < 1:3420250‑M1/50‑47 (MQ=255) gCCCacttatttaacaacttgaaaataaggtgttttacctgggttgttac < 1:7246902‑M1/50‑47 (MQ=255) cccacttatttaacaacttgaaaataaggtgttttacctgggttgttac > 1:4951840‑M1/1‑3 (MQ=255) cccacttatttaacaacttgaaaataaggtgttttacctgggttgttac > 1:512556‑M1/1‑3 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttacaa < 1:4871565‑M1/50‑49 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:7154811‑M1/1‑2 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:7061237‑M1/1‑2 (MQ=255) ccacttatttaacaacttgaaaataaggtgttttacctgggttgttaca > 1:5391500‑M1/1‑2 (MQ=255) cacttatttaacaacttgaaaataaggtgttttacctgggttgttacaaa < 1:543203‑M1/50‑50 (MQ=255) | CTGTAGATTTGTTACACTCCGCTATAGCTTTCTTCAGATCTTTATAGCCCCCAACAACCTCATATAAATCAGGATAATGTCCGAGAAATCCAATTATCC > NC_000913/2994942‑2995040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |