| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 110 [0] | [0] 110 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 96 (1.210) | 59/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 123 total aligned reads displayed.
CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC > NC_000913/586109‑586156 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:561680/1‑50CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:4342430/1‑50CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAAT > 1:6714081/1‑50 TGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC > 1:1601975/1‑50 TGAATCAGCCAGCTTGCCCAGGTATGTCTGAGGTCATGGAAACGGAAATC > 1:4898997/1‑50 GAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT > 1:6702361/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:4048650/50‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT < 1:4613995/50‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTT > 1:511655/1‑50 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCT < 1:6286238/49‑1 AATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATC < 1:5246962/48‑1 ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:5579229/50‑1 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC < 1:1742780/50‑1 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC > 1:4175575/1‑50 TCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCC < 1:5025511/50‑1 CAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT > 1:2120566/1‑50 AGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCT < 1:4466171/49‑1 GCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCA > 1:5558996/1‑50 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT < 1:1326495/50‑1 CCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCAT > 1:1932408/1‑50 CAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:712474/1‑50 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTT < 1:3646273/50‑1 AGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATT > 1:1613657/1‑49 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT < 1:2123123/50‑1 CTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTAT > 1:3067106/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:216372/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC > 1:360865/1‑50 GCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATG < 1:450994/48‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:1288277/50‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:3376719/50‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:2692179/50‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC > 1:1193047/1‑50 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCC < 1:2876737/50‑1 CCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCC < 1:1909965/49‑1 CCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCG < 1:5544885/50‑1 CAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGT > 1:1515088/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC > 1:1203578/1‑50 AGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTC < 1:4315801/50‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:4111503/1‑50 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT < 1:185228/50‑1 GGTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:1204478/1‑50 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:281336/50‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTT < 1:6445901/50‑1 GTGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCT > 1:3911901/1‑49 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:3197864/1‑50 TGTGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTA > 1:4426073/1‑50 TGTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTAT < 1:4970125/49‑1 GTCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC > 1:6682454/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:6404462/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:5418816/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG > 1:58293/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG < 1:2172902/50‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCG > 1:1209045/1‑50 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:2988760/49‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:1080479/49‑1 TCTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCC < 1:2220003/49‑1 CTGAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT > 1:2414755/1‑50 GAGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTT > 1:367042/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTC > 1:6685914/1‑50 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTT < 1:1636409/48‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT < 1:3013462/47‑1 AGGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGT < 1:6595960/47‑1 GGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCC < 1:3810547/50‑1 GGTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCC < 1:2901784/50‑1 GTCATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCG < 1:4433332/50‑1 CATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCT > 1:2960593/1‑50 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT > 1:4565695/1‑50 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT > 1:1946109/1‑50 ATGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTT < 1:1299803/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:2519478/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT > 1:5571030/1‑50 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:206782/50‑1 TGGAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTT < 1:33379/50‑1 GAAACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGC < 1:4615965/50‑1 AACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCC < 1:3958382/50‑1 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCT > 1:6579165/1‑50 ACGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCT < 1:776312/50‑1 CGGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT < 1:5332290/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:3201440/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTC < 1:6401330/50‑1 GGAAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTT > 1:4342247/1‑49 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:5261833/1‑50 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC < 1:6553700/50‑1 AAATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC < 1:1980793/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:3490788/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACC < 1:4732605/50‑1 AATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCAC > 1:3105866/1‑49 ATCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA < 1:2811956/50‑1 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:6034658/1‑49 TCTTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCA > 1:5788464/1‑49 TTCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:2389170/1‑50 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:3424024/1‑49 TCCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT > 1:1812979/1‑49 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC < 1:1121028/49‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC < 1:2408242/49‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:2391841/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACAT < 1:4510038/48‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACA < 1:1479283/47‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCAC < 1:4246435/46‑1 CCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCAC < 1:529669/46‑1 CTGAATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/565001‑565054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcCTCATTTATGCCCGTCTTATCCGTTTCCGCTTTGCCCTTCACCACATC > NC_000913/586109‑586156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |