| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 565,055 | Δ21,054 bp | [intD]–ompT | 37 genes [intD], xisD, exoD, renD, insE‑3, insF‑3, renD, emrE, ylcJ, ybcK, ybcL, ybcM, ylcH, ybcN, ninE, ybcO, rusA, ylcG, ybcQ, nmpC, insH‑2, nmpC, essD, rrrD, rzpD, rzoD, borD, ybcV, ybcW, ylcI, nohD, aaaD, tfaD, ybcY, tfaX, appY, ompT |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 565055 | 586108 | 21054 | 110 [0] | [0] 110 | [intD]–ompT | [intD],xisD,exoD,renD,insE‑3,insF‑3,renD,emrE,ylcJ,ybcK,ybcL,ybcM,ylcH,ybcN,ninE,ybcO,rusA,ylcG,ybcQ,nmpC,insH‑2,nmpC,essD,rrrD,rzpD,rzoD,borD,ybcV,ybcW,ylcI,nohD,aaaD,tfaD,ybcY,tfaX,appY,ompT |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 565054 | 0 (0.000) | 96 (1.210) | 59/88 | 0.0 | 100% | coding (925/1164 nt) | intD | DLP12 prophage; putative integrase |
| ? | NC_000913 | 586109 = | 0 (0.000) | intergenic (‑476/+38) | ompT/envY | outer membrane protease VII (outer membrane protein 3b)/DNA‑binding transcriptional activator EnvY | |||||
Only 100 of 110 total aligned reads displayed.
ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 | aTCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTC < 1:5579229‑M1/50‑1 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:5025511‑M1/50‑2 (MQ=255) tCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCc < 1:1742780‑M1/50‑2 (MQ=255) cagccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:2120566‑M1/1‑48 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct < 1:4466171‑M1/49‑3 (MQ=255) agccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCct > 1:227158‑M1/1‑47 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca > 1:5558996‑M1/1‑46 (MQ=255) gccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctca < 1:6574025‑M1/50‑5 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:3914870‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat < 1:1326495‑M1/50‑6 (MQ=255) ccagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcat > 1:1932408‑M1/1‑45 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:712474‑M1/1‑44 (MQ=255) cagcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:2080319‑M1/1‑44 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcattt < 1:3646273‑M1/50‑8 (MQ=255) agcTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatt > 1:1613657‑M1/1‑43 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat < 1:2123123‑M1/50‑10 (MQ=255) cTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttat > 1:3067106‑M1/1‑41 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:360865‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc > 1:216372‑M1/1‑38 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:450994‑M1/48‑11 (MQ=255) gCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatg < 1:5584508‑M1/48‑11 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:2876737‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:6105463‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc > 1:6700835‑M1/1‑37 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:1288277‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:2692179‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc > 1:1193047‑M1/1‑37 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgccc < 1:3376719‑M1/50‑14 (MQ=255) cccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcc < 1:1909965‑M1/49‑13 (MQ=255) ccAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccg < 1:5544885‑M1/50‑15 (MQ=255) cAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgt > 1:1515088‑M1/1‑35 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc > 1:1203578‑M1/1‑34 (MQ=255) aGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtc < 1:4315801‑M1/50‑17 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1204478‑M1/1‑33 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:1207703‑M1/1‑33 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:4111503‑M1/1‑33 (MQ=255) ggTGTGTCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct < 1:185228‑M1/50‑18 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:6445901‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctt < 1:281336‑M1/50‑19 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:3569216‑M1/1‑32 (MQ=255) gtgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtct > 1:3911901‑M1/1‑32 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:3197864‑M1/1‑31 (MQ=255) tgtgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtctta > 1:4426073‑M1/1‑31 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:4970125‑M1/49‑21 (MQ=255) tgtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttat < 1:5214215‑M1/49‑21 (MQ=255) gtCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc > 1:6682454‑M1/1‑28 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:1209045‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg > 1:58293‑M1/1‑27 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:5418816‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccg < 1:2172902‑M1/50‑24 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:2988760‑M1/49‑23 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:1080479‑M1/49‑23 (MQ=255) tCTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatcc < 1:2220003‑M1/49‑23 (MQ=255) cTGAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt > 1:2414755‑M1/1‑26 (MQ=255) gAGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgttt > 1:367042‑M1/1‑24 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttc > 1:6685914‑M1/1‑23 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtt < 1:1636409‑M1/48‑26 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 1:6595960‑M1/47‑25 (MQ=255) aGGTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgt < 1:3013462‑M1/47‑25 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:3810547‑M1/50‑29 (MQ=255) ggTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttcc < 1:2901784‑M1/50‑29 (MQ=255) gTCATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccg < 1:4433332‑M1/50‑30 (MQ=255) cATGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct > 1:2479652‑M1/1‑19 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:3018132‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctt < 1:1299803‑M1/50‑33 (MQ=255) aTGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgct < 1:4561828‑M1/49‑32 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:206782‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:2519478‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt < 1:33379‑M1/50‑34 (MQ=255) tGGAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgcttt > 1:5571030‑M1/1‑17 (MQ=255) gAAACGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgc < 1:4615965‑M1/50‑36 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc < 1:3958382‑M1/50‑38 (MQ=255) aaCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccc > 1:2824466‑M1/1‑13 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:3291173‑M1/50‑39 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct > 1:6579165‑M1/1‑12 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:776312‑M1/50‑39 (MQ=255) aCGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccct < 1:4410416‑M1/50‑39 (MQ=255) cGGAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt < 1:5332290‑M1/50‑40 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:3201440‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgcccttc < 1:6401330‑M1/50‑41 (MQ=255) ggAAATCTTCctcatttatgcccgtcttatccgtttccgctttgccctt > 1:4342247‑M1/1‑10 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:1980793‑M1/50‑43 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:5261833‑M1/1‑8 (MQ=255) aaaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac < 1:6553700‑M1/50‑43 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:3490788‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacc < 1:4732605‑M1/50‑44 (MQ=255) aaTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcac > 1:3105866‑M1/1‑7 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:2811956‑M1/50‑45 (MQ=255) aTCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca < 1:1701947‑M1/50‑45 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:5788464‑M1/1‑5 (MQ=255) tCTTCctcatttatgcccgtcttatccgtttccgctttgcccttcacca > 1:6034658‑M1/1‑5 (MQ=255) ttCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:2389170‑M1/1‑3 (MQ=255) tCctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat > 1:1812979‑M1/1‑2 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:4848552‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:2408242‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacatc < 1:1121028‑M1/49‑49 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccacat < 1:4510038‑M1/48‑48 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccaca < 1:1479283‑M1/47‑47 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccac < 1:529669‑M1/46‑46 (MQ=255) cctcatttatgcccgtcttatccgtttccgctttgcccttcaccac < 1:4246435‑M1/46‑46 (MQ=255) | ATCAGCCAGCTTGCCCAGGTGTGTCTGAGGTCATGGAAACGGAAATCTTCAATTCCTGCACGACGACAAGCTGATAGCCATGATGTCTTGCTGTCGAT > NC_000913/565005‑565102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |