| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 68 [0] | [0] 70 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 67 (0.760) | 53/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > NC_000913/1140988‑1141033 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT > 1:193338/1‑50 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTT < 1:806477/50‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:3235066/49‑1 AAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGT < 1:6678613/49‑1 AGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTC < 1:4960331/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC < 1:981503/50‑1 AATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGC > 1:4836381/1‑50 ATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCT > 1:2344258/1‑50 TTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTT < 1:6031245/50‑1 TGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTT < 1:5883882/49‑1 GCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTA > 1:5608924/1‑49 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAA < 1:3505201/50‑1 CCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAA > 1:5468319/1‑49 CCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAA < 1:6186131/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:713823/50‑1 CCGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACAT < 1:1781273/50‑1 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA < 1:2083369/50‑1 CGGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATA > 1:4719683/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:6272249/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:4103308/1‑50 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:1378419/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:6648269/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT < 1:4873176/50‑1 GGACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTCAAAACATAT > 1:5628105/1‑50 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATC < 1:1457997/50‑1 GACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATAT > 1:5523730/1‑49 ACGGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCA > 1:5136377/1‑50 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATG < 1:6507782/50‑1 GGTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCAT > 1:716906/1‑49 GTGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGA < 1:2575177/50‑1 TGTAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAA < 1:4173219/50‑1 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:632309/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAAC > 1:1786520/1‑50 TAACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAA < 1:3874340/49‑1 AACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT > 1:720281/1‑50 ACAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACT < 1:1305429/49‑1 CAATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGG > 1:3644252/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2612478/1‑50 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG < 1:2393932/50‑1 AATGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGG > 1:2226042/1‑50 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:1074897/50‑1 TGCATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTA < 1:3385123/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG < 1:1288640/50‑1 CATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATG > 1:2826059/1‑50 ATTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGT > 1:3431381/1‑50 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:5944295/50‑1 TTCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTT < 1:119292/50‑1 TCCGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTT > 1:4141996/1‑50 CGGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTG > 1:259321/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT > 1:1115685/1‑50 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:1903709/50‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:5954080/50‑1 GGCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGT < 1:3710235/50‑1 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC > 1:3785527/1‑50 GCCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTC < 1:1833846/50‑1 CCTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCT > 1:625316/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG > 1:5597830/1‑50 CTGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTG < 1:772215/50‑1 TGCAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC > 1:3128543/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT > 1:2754597/1‑50 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCT < 1:2579348/50‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCC < 1:4200404/49‑1 CAGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGC < 1:4069635/48‑1 AGTGTTCGCTTTAAAGCATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:4916722/50‑1 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:4602503/1‑50 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > 1:4606456/1‑50 AGTGTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG < 1:4741834/50‑1 AAAGAATTTGCCCGCCGGACGGTGTAACAATGCATTCCGGCCTGCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1129348‑1129396‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTG > NC_000913/1140988‑1141033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |