| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,129,397 | Δ11,591 bp | flgN–flgL | flgN, flgM, flgA, flgB, flgC, flgD, flgE, flgF, flgG, flgH, flgI, flgJ, flgK, flgL | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1129397 | 1140987 | 11591 | 68 [0] | [0] 70 | flgN–flgL | flgN,flgM,flgA,flgB,flgC,flgD,flgE,flgF,flgG,flgH,flgI,flgJ,flgK,flgL |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1129396 | 0 (0.000) | 67 (0.760) | 53/98 | 0.0 | 100% | intergenic (+22/+18) | murJ/flgN | putative lipid II flippase MurJ/flagellar biosynthesis protein FlgN |
| ? | NC_000913 | 1140988 = | 0 (0.000) | intergenic (+2/+194) | flgL/rne | flagellar hook‑filament junction protein 2/ribonuclease E | |||||
GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 | aaagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt > 1:193338‑M2/50‑50 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgtt < 1:806477‑M2/2‑1 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt < 1:3235066‑M2/1‑1 (MQ=255) aagaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgt < 1:6678613‑M2/1‑1 (MQ=255) agaatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTc < 1:4960331‑M2/3‑1 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc < 1:981503‑M2/5‑1 (MQ=255) aatttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGc > 1:4836381‑M2/46‑50 (MQ=255) atttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCt > 1:2344258‑M2/45‑50 (MQ=255) tttgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCtt < 1:6031245‑M2/7‑1 (MQ=255) tgcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCttt < 1:5883882‑M2/8‑1 (MQ=255) gcccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTa > 1:5608924‑M2/41‑49 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaa < 1:3505201‑M2/11‑1 (MQ=255) cccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaa > 1:5468319‑M2/40‑49 (MQ=255) ccgccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTaaaa < 1:6186131‑M2/12‑1 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 1:1781273‑M2/15‑1 (MQ=255) ccggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACat < 1:713823‑M2/15‑1 (MQ=255) cggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata > 1:4719683‑M2/35‑50 (MQ=255) cggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACata < 1:2083369‑M2/16‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:4873176‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:6648269‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:4103308‑M2/34‑50 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:1378419‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat < 1:6272249‑M2/17‑1 (MQ=255) ggacggtgtaacaatgcattccggcctgcagtgTTCGCTTCAAAACatat > 1:5628105‑M2/34‑50 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACatat > 1:5523730‑M2/33‑49 (MQ=255) gacggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATc < 1:1457997‑M2/18‑1 (MQ=255) acggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCa > 1:5136377‑M2/32‑50 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCAt > 1:716906‑M2/30‑49 (MQ=255) ggtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATg < 1:6507782‑M2/21‑1 (MQ=255) gtgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGa < 1:2575177‑M2/22‑1 (MQ=255) tgtaacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaa < 1:4173219‑M2/23‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGaaa < 1:3874340‑M2/24‑1 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:1786520‑M2/26‑50 (MQ=255) taacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAAc > 1:632309‑M2/26‑50 (MQ=255) aacaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt > 1:720281‑M2/25‑50 (MQ=255) acaatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACt < 1:1305429‑M2/26‑1 (MQ=255) caatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTgg > 1:3644252‑M2/23‑50 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:2612478‑M2/22‑50 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg < 1:2393932‑M2/29‑1 (MQ=255) aatgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTggg > 1:2226042‑M2/22‑50 (MQ=255) tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 1:1074897‑M2/31‑1 (MQ=255) tgcattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTa < 1:3385123‑M2/31‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg < 1:1288640‑M2/33‑1 (MQ=255) cattccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATg > 1:2826059‑M2/18‑50 (MQ=255) attccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGt > 1:3431381‑M2/17‑50 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt < 1:5944295‑M2/35‑1 (MQ=255) ttccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGtt < 1:119292‑M2/35‑1 (MQ=255) tccggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGttt > 1:4141996‑M2/15‑50 (MQ=255) cggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTg > 1:259321‑M2/13‑50 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt < 1:3710235‑M2/39‑1 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt > 1:1115685‑M2/12‑50 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt < 1:1903709‑M2/39‑1 (MQ=255) ggcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGt < 1:5954080‑M2/39‑1 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc < 1:1833846‑M2/40‑1 (MQ=255) gcctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTc > 1:3785527‑M2/11‑50 (MQ=255) cctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTct > 1:625316‑M2/10‑50 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg < 1:772215‑M2/42‑1 (MQ=255) ctgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctg > 1:5597830‑M2/9‑50 (MQ=255) tgcagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc > 1:3128543‑M2/8‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct < 1:2579348‑M2/45‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcct > 1:2754597‑M2/6‑50 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcc < 1:4200404‑M2/44‑1 (MQ=255) cagtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgc < 1:4069635‑M2/43‑1 (MQ=255) agtgTTCGCTTTAAAGCATATCATGAAACTGGGTATGTTTTGTctgcctg < 1:4916722‑M2/46‑1 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:4606456‑M2/5‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg > 1:4602503‑M2/5‑50 (MQ=255) agtgTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTctgcctg < 1:4741834‑M2/46‑1 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct > 1:3398154/1‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctct > 1:4251487/1‑50 (MQ=255) ttCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGctc < 1:2367593/49‑1 (MQ=255) | GCATTTACCGATATGCAGGGATTGTCGCTCTTCCAGCTCAGCAAATAATTTCGCTTTAAAACATATCATGAAACTGGGTATGTTTTGTCTGCCTGCTCT > NC_000913/1140939‑1141037 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |