| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 83 [0] | [0] 84 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 80 (0.920) | 51/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:1469786/50‑1 ATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAG > 1:1674629/1‑50 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:6747229/50‑1 TCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGC < 1:5224728/50‑1 CCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG > 1:726031/1‑50 CCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCG < 1:6693501/49‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:5923386/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:6236338/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG > 1:4970848/1‑50 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:5186659/50‑1 GTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAG < 1:1800987/50‑1 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC < 1:3261752/50‑1 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:1356621/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGC > 1:4125628/1‑50 CTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTG < 1:2748057/49‑1 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:6253004/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:2660248/1‑50 TATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4852569/1‑50 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCA < 1:2695493/50‑1 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:3251188/1‑48 TGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCC > 1:4201037/1‑48 GTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG > 1:2085217/1‑50 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG < 1:2546999/49‑1 TTATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAG < 1:4638913/49‑1 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:6643362/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:3250330/1‑49 TATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGC > 1:5821179/1‑49 ATTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA > 1:6287566/1‑50 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:1251867/50‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCAT < 1:5075491/50‑1 TTGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCA < 1:620608/49‑1 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:3479880/1‑50 TGACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATC > 1:6408295/1‑50 GACACACAAAAGCGTTGAGGAACAGTTAGAAGCGCAGTGCCCAGCCATCC > 1:1351751/1‑50 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:2488003/50‑1 ACACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCC < 1:341331/50‑1 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:4395652/1‑50 ACACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA < 1:4306164/50‑1 CACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGA > 1:3516598/1‑49 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:1184123/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:3940133/50‑1 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA > 1:1717226/1‑50 ACAAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATA < 1:718022/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT > 1:4736375/1‑50 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:2074375/50‑1 AAAAGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACT < 1:1735286/50‑1 AAGCGTTGAGGAACAGTGAGAAGCGCAGTGCACAGCCATCCCGATACTGC < 1:4078312/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:208149/50‑1 AGCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCT < 1:3767473/50‑1 GCGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTG > 1:4978306/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:4550809/1‑50 CGTTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGC > 1:5110589/1‑50 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:6575750/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:2599395/50‑1 TTGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTT < 1:1881348/50‑1 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1960602/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:687033/1‑50 TGAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1576201/1‑50 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:1024557/1‑49 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT > 1:5535925/1‑49 GAGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTT < 1:1042674/49‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:3768835/50‑1 AGGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCA < 1:2547267/50‑1 GGAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC < 1:2142144/50‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC < 1:2612072/50‑1 GAACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCAC > 1:1991594/1‑49 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA < 1:3736027/50‑1 AACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACC > 1:427702/1‑49 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAA < 1:1833191/50‑1 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA > 1:1063154/1‑49 ACAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCA > 1:777989/1‑49 CAGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAA < 1:2800808/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:3751082/50‑1 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT > 1:3216102/1‑50 AGTGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAAT < 1:1772380/50‑1 TGAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCC < 1:887991/50‑1 GAGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT > 1:6113212/1‑50 AGAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCT < 1:4222662/49‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:6436317/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:2592747/50‑1 GAAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTA < 1:1906305/50‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG < 1:4782339/50‑1 AAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG < 1:292900/50‑1 GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1627468‑1627517‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aAGCGCAGTGCCCAGCCATCCCGATACTGCTGCTTTCACCAAATCCTTAG > NC_000913/1652762‑1652810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |