| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,627,518 | Δ25,244 bp | [ydfG]–[ynfP] | 48 genes [ydfG], ydfH, ydfZ, ydfI, ydfJ, ynfT, ydfK, pinQ, tfaQ, ydfN, nohA, ynfO, ydfO, gnsB, ynfN, ynfR, ynfQ, cspI, rzpQ, rzoQ, rrrQ, ydfR, essQ, cspB, cspF, ynfS, ydfT, ydfU, rem, hokD, relE, relB, ydfV, flxA, ydfW, ydfX, dicC, dicA, ydfA, ydfB, ydfC, dicF, dicB, ydfD, ydfE, insD‑7, intQ, [ynfP] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1627518 | 1652761 | 25244 | 83 [0] | [0] 84 | [ydfG]–[ynfP] | [ydfG],ydfH,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,ydfN,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,ydfE,insD‑7,intQ,[ynfP] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1627517 | 0 (0.000) | 80 (0.920) | 51/96 | 0.0 | 100% | coding (1/747 nt) | ydfG | 3‑hydroxy acid dehydrogenase |
| ? | NC_000913 | 1652762 = | 0 (0.000) | coding (77/111 nt) | ynfP | protein YnfP | |||||
GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627468‑1627566 | gCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGA < 1:1469786‑M1/50‑1 (MQ=255) aTCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAag > 1:1674629‑M1/1‑48 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:6747229‑M1/50‑4 (MQ=255) tCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagc < 1:5224728‑M1/50‑4 (MQ=255) cccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg > 1:726031‑M1/1‑46 (MQ=255) ccGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcg < 1:6693501‑M1/49‑5 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:5923386‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:6236338‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag > 1:4970848‑M1/1‑43 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:5186659‑M1/50‑8 (MQ=255) gTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcag < 1:1800987‑M1/50‑8 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc < 1:3261752‑M1/50‑11 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:1356621‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgc > 1:4125628‑M1/1‑40 (MQ=255) cTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtg < 1:2748057‑M1/49‑10 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:6253004‑M1/1‑39 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:2660248‑M1/1‑39 (MQ=255) tATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:4852569‑M1/1‑39 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgccca < 1:2695493‑M1/50‑14 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:3251188‑M1/1‑37 (MQ=255) tGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcc > 1:4201037‑M1/1‑37 (MQ=255) gTTATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag > 1:2085217‑M1/1‑36 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:2546999‑M1/49‑15 (MQ=255) ttATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccag < 1:4638913‑M1/49‑15 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:6643362‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:3250330‑M1/1‑34 (MQ=255) tATTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagc > 1:5821179‑M1/1‑34 (MQ=255) aTTGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca > 1:6287566‑M1/1‑33 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:1251867‑M1/50‑19 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccat < 1:5075491‑M1/50‑19 (MQ=255) ttGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagcca < 1:620608‑M1/49‑18 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:3479880‑M1/1‑31 (MQ=255) tGACACACAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatc > 1:6408295‑M1/1‑31 (MQ=255) gACACACAAAAGCGTTGAGGAACAGTTAGAagcgcagtgcccagccatcc > 1:1351751‑M1/1‑30 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:2488003‑M1/50‑22 (MQ=255) acacacAAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatccc < 1:341331‑M1/50‑22 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:4395652‑M1/1‑27 (MQ=255) acacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga < 1:4306164‑M1/50‑24 (MQ=255) cacaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccga > 1:3516598‑M1/1‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:1184123‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:3940133‑M1/50‑26 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata > 1:1717226‑M1/1‑25 (MQ=255) acaAAAGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgata < 1:718022‑M1/50‑26 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact > 1:4736375‑M1/1‑23 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:2074375‑M1/50‑28 (MQ=255) aaaaGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatact < 1:1735286‑M1/50‑28 (MQ=255) aaGCGTTGAGGAACAGTGAGAagcgcagtgcacagccatcccgatactgc < 1:4078312‑M1/50‑30 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:208149‑M1/50‑31 (MQ=255) aGCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgct < 1:3767473‑M1/50‑31 (MQ=255) gCGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctg > 1:4978306‑M1/1‑19 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:4550809‑M1/1‑18 (MQ=255) cGTTGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgc > 1:5110589‑M1/1‑18 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:6575750‑M1/50‑35 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:2599395‑M1/50‑35 (MQ=255) ttGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctt < 1:1881348‑M1/50‑35 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1960602‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:687033‑M1/1‑15 (MQ=255) tGAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1576201‑M1/1‑15 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:1024557‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt > 1:5535925‑M1/1‑14 (MQ=255) gAGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgcttt < 1:1042674‑M1/49‑36 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:3768835‑M1/50‑38 (MQ=255) aGGAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttca < 1:2547267‑M1/50‑38 (MQ=255) ggAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac < 1:2142144‑M1/50‑39 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc < 1:2612072‑M1/50‑40 (MQ=255) gAACAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcac > 1:1991594‑M1/1‑11 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca < 1:3736027‑M1/50‑41 (MQ=255) aaCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacc > 1:427702‑M1/1‑10 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaa < 1:1833191‑M1/50‑42 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:1063154‑M1/1‑9 (MQ=255) aCAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcacca > 1:777989‑M1/1‑9 (MQ=255) cAGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaa < 1:2800808‑M1/50‑43 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat < 1:3751082‑M1/50‑44 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat > 1:3216102‑M1/1‑7 (MQ=255) aGTGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaat < 1:1772380‑M1/50‑44 (MQ=255) tGAGAagcgcagtgcccagccatcccgatactgctgctttcaccaaatcc < 1:887991‑M1/50‑46 (MQ=255) gagaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct > 1:6113212‑M1/1‑4 (MQ=255) agaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcct < 1:4222662‑M1/49‑47 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:6436317‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:2592747‑M1/50‑49 (MQ=255) gaagcgcagtgcccagccatcccgatactgctgctttcaccaaatcctta < 1:1906305‑M1/50‑49 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 1:4782339‑M1/50‑50 (MQ=255) aagcgcagtgcccagccatcccgatactgctgctttcaccaaatccttag < 1:292900‑M1/50‑50 (MQ=255) | GCATCCCGTGCTATGTTATTGACACACAAAAGCGTTGAGGAACAGTGAGATGATCGTTTTAGTAACTGGAGCAACGGCAGGTTTTGGTGAATGCATTAC > NC_000913/1627468‑1627566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |