| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 118 [0] | [0] 115 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 115 (1.300) | 68/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 115 total aligned reads displayed.
TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:3675675/50‑1TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT < 1:1684698/50‑1 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:3057734/1‑49 GCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACT > 1:2020596/1‑49 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:6190852/49‑1 CTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTA < 1:1651503/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:4903478/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:2507505/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAA > 1:4715221/1‑50 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:5641656/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:2475201/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:449281/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACA < 1:5404185/49‑1 AGACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAAC < 1:5266954/48‑1 GACACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAAT > 1:5658561/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:4023632/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:3452391/1‑50 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC < 1:6482161/50‑1 CACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGC > 1:1076999/1‑50 ACATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCC > 1:2047825/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG > 1:6388386/1‑50 CATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCG < 1:4766869/50‑1 ATTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGG < 1:4089061/50‑1 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:4934736/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:280598/1‑50 TTACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA < 1:5661630/50‑1 TACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGA > 1:3066363/1‑49 ACATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGAC < 1:2100400/49‑1 CATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:3764465/1‑50 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG < 1:1134600/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGG < 1:2875193/50‑1 ATTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:6453051/1‑49 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:2381/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:213070/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:400542/50‑1 TTCACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAG > 1:168824/1‑48 TTCACTGTAGTTATAACAACATCAATGAATACTAACAATGCCGGACAGGA < 1:4979630/50‑1 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTA > 1:3318132/1‑50 ACTGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGT < 1:5454722/49‑1 TGTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTAC > 1:2634339/1‑49 GTATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTA > 1:4108243/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT < 1:3425859/50‑1 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:6647152/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:3202506/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTAT > 1:2919752/1‑50 TATTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACT < 1:4877027/48‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:1206979/49‑1 TTTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATC < 1:634531/49‑1 TTATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG > 1:602222/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:4723118/1‑50 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:4771427/49‑1 TATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAG < 1:3809272/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG < 1:3092341/49‑1 ATAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGG > 1:566801/1‑49 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:3214818/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCA > 1:3617489/1‑50 TAACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGC < 1:1593857/49‑1 AACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT > 1:2380777/1‑50 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATT < 1:4564930/50‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:508384/49‑1 ACAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCAT < 1:1185129/49‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC < 1:5954889/50‑1 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:341332/1‑50 CAACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTC > 1:1628399/1‑50 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG < 1:6073387/50‑1 AACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCG > 1:6382023/1‑50 ACATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGT < 1:3843721/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT > 1:6448180/1‑50 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:1111081/50‑1 CATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTT < 1:201340/50‑1 ATCAATGAATACTAATAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:2367389/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:426417/50‑1 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:6618065/1‑50 ATCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT < 1:1705598/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:2663012/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTT < 1:3506383/50‑1 TCAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTT > 1:3545733/1‑49 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:3008684/1‑50 CAATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:6600374/1‑50 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTAT < 1:1053349/50‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA < 1:2774482/49‑1 AATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTA > 1:4693551/1‑49 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:5485809/1‑50 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:205465/1‑50 ATGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATA > 1:517994/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:5199892/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:2800841/1‑50 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:4187434/50‑1 TGAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC < 1:2579357/50‑1 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3723919/1‑49 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:3049848/1‑49 GAATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATAC > 1:5101042/1‑49 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA < 1:2403567/50‑1 AATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGA > 1:5382668/1‑50 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:1196849/50‑1 ATACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGAT < 1:3041305/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:4751175/50‑1 TACTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATC < 1:1767697/50‑1 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > 1:4285897/1‑50 CTAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG < 1:4014692/50‑1 TGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3362113‑3362161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAACAATGCCGGACAGGAGTACTATCAGGCATTCGTTTTATACGATCGG > NC_000913/3367643‑3367691 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |