| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,362,162 | Δ5,481 bp | [yhcA]–[yhcF] | [yhcA], yhcD, yhcE, insH‑10, yhcE, [yhcF] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3362162 | 3367642 | 5481 | 118 [0] | [0] 115 | [yhcA]–[yhcF] | [yhcA],yhcD,yhcE,insH‑10,yhcE,[yhcF] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3362161 | 0 (0.000) | 115 (1.300) | 68/98 | 0.0 | 100% | coding (50/675 nt) | yhcA | putative fimbrial chaperone YhcA |
| ? | NC_000913 | 3367643 = | 0 (0.000) | intergenic (+1/‑184) | yhcF/yhcG | DUF1120 domain‑containing protein YhcF/DUF1016 domain‑containing protein YhcG | |||||
Only 100 of 118 total aligned reads displayed.
ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 | aTGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATAc > 1:4682397/1‑50 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:3675675‑M1/50‑2 (MQ=255) tGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt < 1:1684698‑M1/50‑2 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:3057734‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:2020596‑M1/1‑48 (MQ=255) gCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACt > 1:1395588‑M1/1‑48 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:6190852‑M1/49‑3 (MQ=255) cTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACta < 1:1651503‑M1/49‑3 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:4715221‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:4903478‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaa > 1:2507505‑M1/1‑44 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:5404185‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:2475201‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaaca < 1:6447866‑M1/49‑6 (MQ=255) aGACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaac < 1:5266954‑M1/48‑5 (MQ=255) gACACATTACATTCACTGTATTTATAACAACATCAATGAATACtaacaat > 1:5658561‑M1/1‑43 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc > 1:1076999‑M1/1‑41 (MQ=255) cacaTTACATTCACTGTATTTATAACAACATCAATGAATACtaacaatgc < 1:6482161‑M1/50‑10 (MQ=255) acattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgcc > 1:2047825‑M1/1‑40 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg < 1:4766869‑M1/50‑12 (MQ=255) cattacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccg > 1:6388386‑M1/1‑39 (MQ=255) attacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgg < 1:4089061‑M1/50‑13 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:4934736‑M1/1‑37 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga < 1:5661630‑M1/50‑14 (MQ=255) ttacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:280598‑M1/1‑37 (MQ=255) tacattCACTGTATTTATAACAACATCAATGAATACtaacaatgccgga > 1:3066363‑M1/1‑36 (MQ=255) acattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggac < 1:2100400‑M1/49‑15 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag < 1:3539530‑M1/50‑17 (MQ=255) cattCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:3764465‑M1/1‑34 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:1134600‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagg < 1:2875193‑M1/50‑18 (MQ=255) attCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:6453051‑M1/1‑33 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:213070‑M1/50‑19 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:400542‑M1/50‑19 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:2381‑M1/50‑19 (MQ=255) ttCACTGTATTTATAACAACATCAATGAATACtaacaatgccggacag > 1:168824‑M1/1‑32 (MQ=255) ttCACTGTAGTTATAACAACATCAATGAATACtaacaatgccggacagga < 1:4979630‑M1/50‑19 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagta > 1:3318132‑M1/1‑29 (MQ=255) aCTGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagt < 1:5454722‑M1/49‑21 (MQ=255) tGTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtac > 1:2634339‑M1/1‑27 (MQ=255) gTATTTATAACAACATCAATGAATACtaacaatgccggacaggagtacta > 1:4108243‑M1/1‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:3202506‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:2919752‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:1939650‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat > 1:6647152‑M1/1‑25 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtactat < 1:3425859‑M1/50‑26 (MQ=255) tATTTATAACAACATCAATGAATACtaacaatgccggacaggagtact < 1:4877027‑M1/48‑24 (MQ=255) tttATAACAACATCAATGAATACtaacaatgccggacaggagtactatc < 1:634531‑M1/49‑27 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:4723118‑M1/1‑21 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:3809272‑M1/49‑29 (MQ=255) tataACAACATCAATGAATACtaacaatgccggacaggagtactatcag < 1:4771427‑M1/49‑29 (MQ=255) ataACAACATCAATGAATACtaacaatgccggacaggagtactatcagg > 1:566801‑M1/1‑20 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:3617489‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggca > 1:3214818‑M1/1‑19 (MQ=255) taACAACATCAATGAATACtaacaatgccggacaggagtactatcaggc < 1:1593857‑M1/49‑31 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:3181235‑M1/1‑18 (MQ=255) aacaacATCAATGAATACtaacaatgccggacaggagtactatcaggcat > 1:2380777‑M1/1‑18 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:4564930‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcatt < 1:2610023‑M1/50‑34 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:508384‑M1/49‑33 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:5871530‑M1/49‑33 (MQ=255) acaacaTCAATGAATACtaacaatgccggacaggagtactatcaggcat < 1:1185129‑M1/49‑33 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:341332‑M1/1‑16 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:23585‑M1/50‑35 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc > 1:1628399‑M1/1‑16 (MQ=255) caacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattc < 1:5954889‑M1/50‑35 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg > 1:6382023‑M1/1‑15 (MQ=255) aacaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcg < 1:6073387‑M1/50‑36 (MQ=255) acaTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgt < 1:3843721‑M1/50‑37 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:1111081‑M1/50‑38 (MQ=255) caTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtt < 1:201340‑M1/50‑38 (MQ=255) aTCAATGAATACtaataatgccggacaggagtactatcaggcattcgttt > 1:2367389‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:6618065‑M1/1‑12 (MQ=255) aTCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt < 1:426417‑M1/50‑39 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:2663012‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttt < 1:3506383‑M1/50‑40 (MQ=255) tCAATGAATACtaacaatgccggacaggagtactatcaggcattcgttt > 1:3545733‑M1/1‑11 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:3941837‑M1/1‑10 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:3008684‑M1/1‑10 (MQ=255) cAATGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:6600374‑M1/1‑10 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgttttat < 1:1053349‑M1/50‑42 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta > 1:4693551‑M1/1‑9 (MQ=255) aaTGAATACtaacaatgccggacaggagtactatcaggcattcgtttta < 1:2774482‑M1/49‑41 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:5485809‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata > 1:517994‑M1/1‑8 (MQ=255) aTGAATACtaacaatgccggacaggagtactatcaggcattcgttttata < 1:5395322‑M1/50‑43 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:426299‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:4187434‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac < 1:2579357‑M1/50‑44 (MQ=255) tGAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:2800841‑M1/1‑7 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:5101042‑M1/1‑6 (MQ=255) gAATACtaacaatgccggacaggagtactatcaggcattcgttttatac > 1:3049848‑M1/1‑6 (MQ=255) aaTACtaacaatgccggacaggagtactatcaggcattcgttttatacga > 1:5382668‑M1/1‑5 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:1196849‑M1/50‑47 (MQ=255) aTACtaacaatgccggacaggagtactatcaggcattcgttttatacgat < 1:3041305‑M1/50‑47 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:1767697‑M1/50‑48 (MQ=255) tACtaacaatgccggacaggagtactatcaggcattcgttttatacgatc < 1:4751175‑M1/50‑48 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg > 1:4981739‑M1/1‑1 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg > 1:4285897‑M1/1‑1 (MQ=255) ctaacaatgccggacaggagtactatcaggcattcgttttatacgatcgg < 1:4014692‑M1/50‑50 (MQ=255) | ATGCTCAGACACATTACATTCACTGTATTTATAACAACATCAATGAATACCTTAGCCACAGGGATGGTTCCTGAAACATCAGTATTGCTGGTTGATGAA > NC_000913/3362112‑3362210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |