Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 98 [0] | [0] 117 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1197136 | 0 (0.000) | 85 (1.280) +CAGATAATTCAA |
51/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI |
AAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATTTTGTCGATTGTATCCCGACAAGGAACGGCAGAGAGAACATTAGAGCAA > NC_000913/1197089‑1197185 | aaGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTAt > 1:376208/1‑48 (MQ=255) gTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagata < 1:2577240‑M1/50‑7 (MQ=255) gTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagata < 1:2841469‑M1/50‑7 (MQ=255) tctcACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataa > 1:1104696‑M1/1‑43 (MQ=255) tctcACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataa < 1:3801689‑M1/50‑8 (MQ=255) tcACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataatt > 1:6364108‑M1/1‑41 (MQ=255) tcACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataatt > 1:3412615‑M1/1‑41 (MQ=255) aCCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattc > 1:359613‑M1/1‑39 (MQ=255) aCCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattc > 1:2098809‑M1/1‑39 (MQ=255) aCCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataatt < 1:923124‑M1/48‑10 (MQ=255) aCCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataat < 1:6205821‑M1/47‑9 (MQ=255) cctcctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattca > 1:1644161‑M1/1‑38 (MQ=255) ctcctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattca > 1:5782610‑M1/1‑37 (MQ=255) tcctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaag > 1:198039‑M1/1‑36 (MQ=255) ctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcg > 1:2074825‑M1/1‑34 (MQ=255) ctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcg < 1:6635895‑M1/50‑17 (MQ=255) ctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagc < 1:3837109‑M1/49‑16 (MQ=255) ctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagc < 1:417155‑M1/49‑16 (MQ=255) ctGATTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaag < 1:31120‑M1/48‑15 (MQ=255) aTTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtgg < 1:5725004‑M1/50‑20 (MQ=255) aTTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtgg > 1:2406604‑M1/1‑31 (MQ=255) aTTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtg < 1:3464961‑M1/49‑19 (MQ=255) aTTTTAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgt < 1:1220718‑M1/48‑18 (MQ=255) ttttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggc < 1:4673829‑M1/50‑21 (MQ=255) ttttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggc > 1:1220785‑M1/1‑30 (MQ=255) tttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggct > 1:3821308‑M1/1‑29 (MQ=255) tttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggct > 1:4059097‑M1/1‑29 (MQ=255) ttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggct < 1:5189780‑M1/49‑22 (MQ=255) ttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggct < 1:5325499‑M1/49‑22 (MQ=255) ttAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggct < 1:6742095‑M1/49‑22 (MQ=255) tAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgg > 1:681539‑M1/1‑27 (MQ=255) tAGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctg < 1:1614887‑M1/49‑23 (MQ=255) aGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgt > 1:3035690‑M1/1‑26 (MQ=255) aGTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgt > 1:4436392‑M1/1‑26 (MQ=255) gTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtga < 1:2971903‑M1/50‑26 (MQ=255) gTAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtg < 1:5406218‑M1/49‑25 (MQ=255) tAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgat > 1:222759‑M1/1‑24 (MQ=255) tAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgat < 1:5010184‑M1/50‑27 (MQ=255) tAATCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgat < 1:3458440‑M1/50‑27 (MQ=255) aTCTCTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatg < 1:1270149‑M1/49‑28 (MQ=255) tctcTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatga > 1:3861230‑M1/1‑21 (MQ=255) tctcTTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatga > 1:6185436‑M1/1‑21 (MQ=255) ctctTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatga > 1:358649‑M1/1‑20 (MQ=255) tctTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatag > 1:1569202‑M1/1‑19 (MQ=255) ctTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatag > 1:3323783‑M1/1‑18 (MQ=255) ctTGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatag > 1:715878‑M1/1‑18 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatagg > 1:4479961‑M1/1‑17 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatagg > 1:2047554‑M1/1‑17 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatag < 1:1550352‑M1/48‑32 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgata < 1:4969833‑M1/47‑31 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgata < 1:266442‑M1/47‑31 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgat < 1:173998‑M1/46‑30 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgat < 1:218854‑M1/46‑30 (MQ=255) ttGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgat < 1:670282‑M1/46‑30 (MQ=255) tGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaa > 1:1117649‑M1/1‑16 (MQ=255) tGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaa > 1:2424405‑M1/1‑16 (MQ=255) tGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaa > 1:3979447‑M1/1‑16 (MQ=255) tGATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaa > 1:5497983‑M1/1‑16 (MQ=255) gATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaat > 1:4581333‑M1/1‑15 (MQ=255) gATGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaa < 1:150425‑M1/49‑35 (MQ=255) gATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatagga < 1:2314262‑M1/48‑34 (MQ=255) gATGCTAAGAACTATcagataattcaaagcgtggctgtgatgatagg < 1:5335197‑M1/47‑33 (MQ=255) aTGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaatt < 1:6624434‑M1/50‑37 (MQ=255) aTGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaatt < 1:3370098‑M1/50‑37 (MQ=255) aTGCTAAGAACTATcagataattcaaagcgtggctgtgatgataggaat < 1:3536047‑M1/49‑36 (MQ=255) cTAAGAACTATcagataattcaaagcgtggctgtgatgataggaattatg < 1:3539237‑M1/50‑40 (MQ=255) cTAAGAACTATcagataattcaaagcgtggctgtgatgataggaattatg > 1:5052567‑M1/1‑11 (MQ=255) cTAAGAACTATcagataattcaaagcgtggctgtgatgataggaattat < 1:5976272‑M1/49‑39 (MQ=255) tAAGAACTATcagataattcaaagcgtggctgtgatgataggaattatgt > 1:3187071‑M1/1‑10 (MQ=255) aaGAACTATcagataattcaaagcgtggctgtgatgataggaattatgtt > 1:488243‑M1/1‑9 (MQ=255) aaGAACTATcagataattcaaagcgtggctgtgatgataggaattatgtt > 1:4238626‑M1/1‑9 (MQ=255) aGAACTATcagataattcaaagcgtggctgtgatgataggaattatgttt > 1:4102639‑M1/1‑8 (MQ=255) aGAACTATcagataattcaaagcgtggctgtgatgataggaattatgt < 1:105409‑M1/48‑41 (MQ=255) aGAACTATcagataattcaaagcgtggctgtgatgataggaattatgt < 1:6545758‑M1/48‑41 (MQ=255) aGAACTATcagataattcaaagcgtggctgtgatgataggaattatgt < 1:2336810‑M1/48‑41 (MQ=255) gAACTATcagataattcaaagcgtggctgtgatgataggaattatgtttt < 1:2866996‑M1/50‑44 (MQ=255) gAACTATcagataattcaaagcgtggctgtgatgataggaattatgtttt < 1:4706215‑M1/50‑44 (MQ=255) aaCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:6413300‑M1/1‑6 (MQ=255) aaCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:6317614‑M1/1‑6 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgtttttt < 1:3821696‑M1/50‑46 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgtttttt < 1:5199705‑M1/50‑46 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:2342521‑M1/1‑5 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:2787220‑M1/1‑5 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:3444705‑M1/1‑5 (MQ=255) aCTATcagataattcaaagcgtggctgtgatgataggaattatgttttt > 1:2712565‑M1/1‑5 (MQ=255) tATcagataattcaaagcgtggctgtgatgataggaattatgttttttac > 1:6438552‑M1/1‑3 (MQ=255) tATcagataattcaaagcgtggctgtgatgataggaattatgttttttac > 1:6555085‑M1/1‑3 (MQ=255) tATcagataattcaaagcgtggctgtgatgataggaattatgttttttac > 1:2362279‑M1/1‑3 (MQ=255) aTcagataattcaaagcgtggctgtgatgataggaattatgttttttacg > 1:6089726‑M1/1‑2 (MQ=255) aTcagataattcaaagcgtggctgtgatgataggaattatgttttttacg > 1:4028490‑M1/1‑2 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttacgt < 1:972864‑M1/50‑50 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttacgt < 1:5299135‑M1/50‑50 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttacgt < 1:4570497‑M1/50‑50 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttacg < 1:2692337‑M1/49‑49 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttacg < 1:2432057‑M1/49‑49 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttac < 1:6183353‑M1/48‑48 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttac < 1:381736‑M1/48‑48 (MQ=255) tcagataattcaaagcgtggctgtgatgataggaattatgttttttac < 1:1924883‑M1/48‑48 (MQ=255) | AAGAGTCTCACCTCCTGATTTTAGTAATCTCTTGATGCTAAGAACTATTTTGTCGATTGTATCCCGACAAGGAACGGCAGAGAGAACATTAGAGCAA > NC_000913/1197089‑1197185 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |