| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,197,137 | 25956 bp→CAGATAATTCAA | [ymfD]–[ymgI] | 42 genes [ymfD], ymfE, lit, intE, xisE, ymfH, ymfI, ymfJ, ymfK, ymfT, ymfL, ymfM, oweE, ymfN, aaaE, ymfR, beeE, jayE, ymfQ, ycfK, tfaP, tfaE, stfE, pinE, mcrA, icdC, iraM, ymgK, ymgL, ycgX, bluR, bluF, ycgZ, ymgA, ariR, ymgC, pdeG, ymgF, ycgH, ymgD, ymgG, [ymgI] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1197137 | 1223092 | 25956 | 98 [0] | [0] 117 | [ymfD]–[ymgI] | [ymfD],ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,oweE,ymfN,aaaE,ymfR,beeE,jayE,ymfQ,ycfK,tfaP,tfaE,stfE,pinE,mcrA,icdC,iraM,ymgK,ymgL,ycgX,bluR,bluF,ycgZ,ymgA,ariR,ymgC,pdeG,ymgF,ycgH,ymgD,ymgG,[ymgI] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1197136 | 0 (0.000) | 85 (1.280) +CAGATAATTCAA |
51/74 | 0.0 | 100% | coding (397/666 nt) | ymfD | e14 prophage; putative SAM‑dependent methyltransferase |
| ? | NC_000913 | 1223093 = | 0 (0.000) | coding (71/174 nt) | ymgI | uncharacterized protein YmgI | |||||
Only 100 of 117 total aligned reads displayed.
ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 | tcctgattttagtaatctcttgatgctaagaactatcagataattcaaAg > 1:198039‑M2/49‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAg < 1:31120‑M2/2‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:417155‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGc < 1:3837109‑M2/3‑1 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg > 1:2074825‑M2/47‑50 (MQ=255) ctgattttagtaatctcttgatgctaagaactatcagataattcaaAGCg < 1:6635895‑M2/4‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGt < 1:1220718‑M2/5‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg < 1:5725004‑M2/7‑1 (MQ=255) attttagtaatctcttgatgctaagaactatcagataattcaaAGCGTgg > 1:2406604‑M2/44‑50 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc > 1:1220785‑M2/43‑50 (MQ=255) ttttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGc < 1:4673829‑M2/8‑1 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:3821308‑M2/42‑50 (MQ=255) tttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt > 1:4059097‑M2/42‑50 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:6742095‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:5325499‑M2/9‑1 (MQ=255) ttagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCt < 1:5189780‑M2/9‑1 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGctgg > 1:681539‑M2/40‑49 (MQ=255) tagtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtg < 1:1614887‑M2/10‑1 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:4436392‑M2/39‑49 (MQ=255) agtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCtgt > 1:3035690‑M2/39‑49 (MQ=255) gtaatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtga < 1:2971903‑M2/13‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:5010184‑M2/14‑1 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat > 1:222759‑M2/37‑50 (MQ=255) taatctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgat < 1:3458440‑M2/14‑1 (MQ=255) atctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatg < 1:1270149‑M2/15‑1 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:3861230‑M2/34‑49 (MQ=255) tctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:6185436‑M2/34‑49 (MQ=255) ctcttgatgctaagaactatcagataattcaaAGCGTGGCTGtgatga > 1:358649‑M2/33‑48 (MQ=255) tcttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:1569202‑M2/32‑50 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:3323783‑M2/31‑49 (MQ=255) cttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg > 1:715878‑M2/31‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:670282‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTgatgat < 1:218854‑M2/17‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:266442‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATa < 1:4969833‑M2/18‑1 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg > 1:2047554‑M2/30‑49 (MQ=255) ttgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAg < 1:1550352‑M2/19‑1 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:1117649‑M2/29‑50 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:3979447‑M2/29‑50 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:5497983‑M2/29‑50 (MQ=255) tgatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa > 1:2424405‑M2/29‑50 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAgg < 1:5335197‑M2/20‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGaa < 1:150425‑M2/22‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGa < 1:2314262‑M2/21‑1 (MQ=255) gatgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt > 1:4581333‑M2/28‑50 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAtt < 1:3370098‑M2/24‑1 (MQ=255) atgctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAAt < 1:3536047‑M2/23‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTAt < 1:5976272‑M2/26‑1 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg > 1:5052567‑M2/24‑50 (MQ=255) ctaagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATg < 1:3539237‑M2/27‑1 (MQ=255) taagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt > 1:3187071‑M2/23‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:4238626‑M2/22‑50 (MQ=255) aagaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtt > 1:488243‑M2/22‑50 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:2336810‑M2/28‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:6545758‑M2/28‑1 (MQ=255) agaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGt < 1:105409‑M2/28‑1 (MQ=255) gaactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGtttt < 1:4706215‑M2/31‑1 (MQ=255) aactatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:6413300‑M2/19‑50 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:2712565‑M2/18‑49 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:2787220‑M2/18‑49 (MQ=255) actatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGttttt > 1:3444705‑M2/18‑49 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:6555085‑M2/16‑50 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:6438552‑M2/16‑50 (MQ=255) tatcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc > 1:2362279‑M2/16‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:4028490‑M2/15‑50 (MQ=255) atcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg > 1:6089726‑M2/15‑50 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:6183353‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:381736‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTAc < 1:1924883‑M2/35‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg < 1:2692337‑M2/36‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACg < 1:2432057‑M2/36‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:4570497‑M2/37‑1 (MQ=255) tcagataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGt < 1:5299135‑M2/37‑1 (MQ=255) agataattcaaAGTGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:5324518‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg > 1:2386926‑M2/12‑49 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:4549251‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:1563301‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:524233‑M2/38‑1 (MQ=255) agataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTg < 1:5040809‑M2/38‑1 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa > 1:3438209‑M2/11‑50 (MQ=255) gataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGaa < 1:1283807‑M2/40‑1 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:2787659‑M2/10‑50 (MQ=255) ataattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt < 1:2967164‑M2/41‑1 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1948663‑M2/9‑49 (MQ=255) taattcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATg < 1:2157426‑M2/42‑1 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAAt > 1:1863224‑M2/7‑47 (MQ=255) attcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATga < 1:6372728‑M2/43‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgaga < 1:5372490‑M2/45‑1 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:1702620‑M2/6‑49 (MQ=255) ttcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATgag > 1:2165130‑M2/6‑49 (MQ=255) tcaaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa > 1:4432462‑M2/5‑50 (MQ=255) caaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaa < 1:3274593‑M2/46‑1 (MQ=255) aaAGCGTGGCTGTGATTATAGGAATTATGTTTTTTACGTGAATGAGaat > 1:4284099‑M2/3‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:6345247‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaata < 1:3217369‑M2/48‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:4177319‑M2/47‑1 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat > 1:472010‑M2/3‑49 (MQ=255) aaAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaat < 1:2590985‑M2/47‑1 (MQ=255) aAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataa > 1:4037527‑M2/2‑50 (MQ=255) aGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGaataat > 1:2750693/1‑50 (MQ=255) | ATCTGCTTAACTAAAGAACGCTCGCTATTATTCAGATAATTCAAAATGAGCGTGGCTGTGATGATAGGAATTATGTTTTTTACGTGAATGAGAATAAT > NC_000913/1223045‑1223142 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |