| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,509,562 | Δ46,201 bp | [hicB]–maeA | 43 genes [hicB], ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, rhsE, ydcD, yncO, yncI, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddJ, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1509562 | 1555762 | 46201 | 95 [0] | [0] 95 | [hicB]–maeA | [hicB],ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ortT,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncO,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddJ,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1509561 | 0 (0.000) | 95 (1.070) | 56/98 | 0.0 | 100% | coding (54/417 nt) | hicB | antitoxin of the HicA‑HicB toxin‑antitoxin system |
| ? | NC_000913 | 1555763 = | 0 (0.000) | intergenic (‑94/+63) | maeA/sra | malate dehydrogenase, NAD‑requiring/30S ribosomal subunit protein S22 | |||||
TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGA > NC_000913/1509514‑1509608 | tATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTa > 1:186764‑M1/1‑48 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:3663916‑M1/1‑47 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 1:2178638‑M1/49‑3 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 1:3628149‑M1/49‑3 (MQ=255) aTCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaa < 1:5125465‑M1/49‑3 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaac < 1:165444‑M1/50‑5 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:6474857‑M1/1‑46 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa < 1:1810741‑M1/49‑4 (MQ=255) tCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaa > 1:3426909‑M1/1‑46 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:6443067‑M1/49‑6 (MQ=255) ccGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaaca < 1:783549‑M1/49‑6 (MQ=255) cGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaa > 1:2817268‑M1/1‑43 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 1:5370862‑M1/50‑9 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaa < 1:755612‑M1/50‑9 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa > 1:706085‑M1/1‑42 (MQ=255) gTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaa > 1:4482481‑M1/1‑42 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa > 1:3112783‑M1/1‑41 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:201752‑M1/50‑10 (MQ=255) tCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaa < 1:4825893‑M1/50‑10 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca < 1:1837995‑M1/50‑12 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaaca > 1:4490224‑M1/1‑39 (MQ=255) aCTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaac < 1:799529‑M1/49‑11 (MQ=255) tctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacac > 1:2863792‑M1/1‑37 (MQ=255) ctTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacacca > 1:1862723‑M1/1‑36 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg > 1:3824533‑M1/1‑33 (MQ=255) acacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccatt < 1:5035137‑M1/49‑17 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:4066305‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:73757‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:3940877‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:3928095‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgc < 1:333871‑M1/50‑19 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:5947844‑M1/49‑18 (MQ=255) cacCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattg < 1:1431425‑M1/49‑18 (MQ=255) acCCGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:1078218‑M1/1‑31 (MQ=255) ccGCGCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcg > 1:5986623‑M1/1‑29 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag < 1:3935103‑M1/50‑23 (MQ=255) cgcgCCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcag < 1:3743228‑M1/50‑23 (MQ=255) cgcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc < 1:519474‑M1/50‑25 (MQ=255) gcCGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggc > 1:360158‑M1/1‑25 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:1372392‑M1/1‑24 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa < 1:4723264‑M1/50‑27 (MQ=255) ccGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaa > 1:171158‑M1/1‑24 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:1513431‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:2676846‑M1/1‑23 (MQ=255) cGGAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaat > 1:2553422‑M1/1‑23 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:5788592‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg < 1:5416975‑M1/50‑29 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:2347919‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:2377859‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:157447‑M1/1‑22 (MQ=255) ggAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatg > 1:2783617‑M1/1‑22 (MQ=255) gAAGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatgg < 1:115732‑M1/50‑30 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:5159861‑M1/1‑19 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg < 1:3994181‑M1/50‑32 (MQ=255) aGGCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtg > 1:1482407‑M1/1‑19 (MQ=255) gCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt < 1:5114122‑M1/50‑34 (MQ=255) gCGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:3611461‑M1/1‑17 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 1:4376589‑M1/50‑35 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt < 1:1666286‑M1/50‑35 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:2559489‑M1/1‑16 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:6720466‑M1/1‑16 (MQ=255) cGGTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtt > 1:149694‑M1/1‑16 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccatttcgcaggcaatggtgttt > 1:6607149‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttta < 1:2337571‑M1/50‑36 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:3025884‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:2718609‑M1/1‑15 (MQ=255) ggTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgttt > 1:6481444‑M1/1‑15 (MQ=255) gTTATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaa < 1:4256419‑M1/50‑37 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:5480038‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:5754526‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:736767‑M1/1‑13 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat < 1:4162592‑M1/50‑38 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat < 1:2236432‑M1/50‑38 (MQ=255) ttATATGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaat > 1:4061103‑M1/1‑13 (MQ=255) tataTGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc > 1:3486453‑M1/1‑12 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:3437785‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:3647956‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcg > 1:1301707‑M1/1‑11 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 1:2398648‑M1/49‑39 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 1:284355‑M1/49‑39 (MQ=255) atatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatc < 1:1538669‑M1/49‑39 (MQ=255) tatGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt < 1:5035646‑M1/50‑41 (MQ=255) atGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgt > 1:6632987‑M1/1‑9 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca < 1:5628775‑M1/50‑43 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtca < 1:2098503‑M1/50‑43 (MQ=255) tGGTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtc < 1:2144857‑M1/49‑42 (MQ=255) ggTTTCTaaacaaaaacacctttgcgcaggcaatggcgtttaatcgtcat > 1:1525388‑M1/1‑7 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:6189537‑M1/50‑45 (MQ=255) gTTTCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt < 1:2639700‑M1/50‑45 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattg < 1:2675310‑M1/50‑46 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:1504300‑M1/1‑5 (MQ=255) tttCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcatt > 1:4164990‑M1/1‑5 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:5186673‑M1/1‑3 (MQ=255) tCTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:2118806‑M1/1‑3 (MQ=255) cTaaacaaaaacaccattgcgcaggcaatggtgtttaatcgtcattgag > 1:6144572‑M1/1‑2 (MQ=255) | TATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGACCCAGGGCGAAACTGTCGCTGA > NC_000913/1509514‑1509608 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |