Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 80 [0] | [0] 78 | endA | DNA‑specific endonuclease I |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3090346 | 0 (0.000) | 75 (0.850) | 47/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase |
ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090296‑3090394 | aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:770975/1‑50 (MQ=255) aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:6111190/1‑50 (MQ=255) aCCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg > 1:5870007/1‑50 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:3515928/49‑1 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTg < 1:2066981/49‑1 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:4585690‑M1/50‑2 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:3524513‑M1/50‑2 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc < 1:3330842‑M1/50‑2 (MQ=255) ccAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGc > 1:3052715‑M1/1‑49 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:2531976‑M1/1‑47 (MQ=255) aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcc > 1:2196783‑M1/1‑47 (MQ=255) aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta < 1:2861722‑M1/50‑5 (MQ=255) aaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGccta > 1:2660713‑M1/1‑45 (MQ=255) aCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctaca < 1:2234701‑M1/50‑7 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:935987‑M1/1‑42 (MQ=255) aGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacac > 1:3529124‑M1/1‑42 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:3398834‑M1/50‑11 (MQ=255) cTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactag < 1:3624043‑M1/50‑11 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:1432086‑M1/1‑38 (MQ=255) ttCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg > 1:6370226‑M1/1‑38 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcg < 1:2914830‑M1/49‑13 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:2194756‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:3178632‑M1/48‑12 (MQ=255) tCGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagc < 1:4252225‑M1/48‑12 (MQ=255) cGCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgg > 1:1765020‑M1/1‑36 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:5567536‑M1/1‑35 (MQ=255) gCTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcggga > 1:1614392‑M1/1‑35 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:2773895‑M1/50‑17 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:4829409‑M1/1‑34 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:6651765‑M1/50‑17 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat > 1:3163485‑M1/1‑34 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:2466962‑M1/50‑17 (MQ=255) cTACGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggat < 1:827071‑M1/50‑17 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattct < 1:5447647‑M1/50‑20 (MQ=255) cGTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggatt < 1:4844675‑M1/48‑18 (MQ=255) gTTGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctt < 1:3318989‑M1/50‑21 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:4161369‑M1/1‑28 (MQ=255) tGCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt > 1:1028377‑M1/1‑28 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttt < 1:4412311‑M1/49‑23 (MQ=255) gCTGGCTCGTTTTAACACGGAG‑AAGTGcctacacaagcgggattcttttt > 1:5808283‑M1/1‑27 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg > 1:163878‑M1/1‑26 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttg < 1:5321220‑M1/50‑25 (MQ=255) cTGGCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattcttttt < 1:1191091‑M1/49‑24 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtta < 1:4082205‑M1/50‑28 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:1338996‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:1375210‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgtt < 1:4628736‑M1/49‑27 (MQ=255) gCTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgt < 1:6503284‑M1/48‑26 (MQ=255) cTCGTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaa < 1:6242623‑M1/50‑29 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc < 1:2672649‑M1/50‑32 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccc > 1:6581275‑M1/1‑19 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc < 1:6287422‑M1/49‑31 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacc < 1:265409‑M1/49‑31 (MQ=255) gTTTTAACACGGAG‑AAGTGcctacactagcgggattctttttgttaac < 1:114214‑M1/48‑30 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:196737‑M1/50‑33 (MQ=255) ttttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc < 1:2995309‑M1/50‑33 (MQ=255) tttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccc > 1:5261794‑M1/1‑17 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:1723239‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta > 1:6126776‑M1/1‑16 (MQ=255) ttAACACGGAG‑AAGTGcctacactagcgggattctttttgttaacccct < 1:3918850‑M1/49‑34 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:5157004‑M1/49‑35 (MQ=255) tAACACGGAG‑AAGTGcctacactagcgggattctttttgttaaccccta < 1:789669‑M1/49‑35 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctaccc < 1:3423899‑M1/50‑38 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:3001450‑M1/49‑37 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:3191538‑M1/49‑37 (MQ=255) acacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacc < 1:2313569‑M1/49‑37 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:6269778‑M1/50‑39 (MQ=255) cacGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccc < 1:6369193‑M1/50‑39 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:5942591‑M1/1‑11 (MQ=255) acGGAG‑AAGTGcctacactagcgggattctttttgttaacccctacccca > 1:1281217‑M1/1‑11 (MQ=255) agaagtGcctacactagcgggattctttttgttaacccctaccccacgcg > 1:2980775‑M1/3‑7 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcgt < 1:4898201‑M1/49‑45 (MQ=255) gaagTGcctacactagcgggattctttttgttaacccctaccccacgcgt < 1:4419242‑M1/49‑45 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta < 1:1719912‑M1/50‑46 (MQ=255) aaGTGcctacactagcgggattctttttgttaacccctaccccacgcgta > 1:4148811‑M1/1‑5 (MQ=255) aGTGcctacactagcgggattctttttgttaacccctaccccacgcgtac < 1:6547057‑M1/50‑47 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtaca < 1:1112927‑M1/50‑48 (MQ=255) gTGcctacactagcgggattctttttgttaacccctaccccacgcgtac > 1:5946075‑M1/1‑3 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa < 1:4238108‑M1/50‑49 (MQ=255) tGcctacactagcgggattctttttgttaacccctaccccacgcgtacaa < 1:3286975‑M1/50‑49 (MQ=255) | ACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTT > NC_000913/3090296‑3090394 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |