| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,090,347 | Δ708 bp | coding (1‑708/708 nt) | endA → | DNA‑specific endonuclease I |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3090347 | 3091054 | 708 | 80 [0] | [0] 78 | endA | DNA‑specific endonuclease I |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3090346 | 0 (0.000) | 75 (0.850) | 47/98 | 0.1 | 100% | intergenic (+94/‑1) | yggI/endA | conserved protein YggI/DNA‑specific endonuclease I |
| ? | NC_000913 | 3091055 = | 0 (0.000) | intergenic (+1/‑79) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 | ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc < 1:4585690‑M2/1‑1 (MQ=255)ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc < 1:3524513‑M2/1‑1 (MQ=255)ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc < 1:3330842‑M2/1‑1 (MQ=255)ccaaaacagctttcgctacgttgctggctcgttttaacacggagaagtgc > 1:3052715‑M2/50‑50 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:2531976‑M2/48‑49 (MQ=255) aaaacagctttcgctacgttgctggctcgttttaacacggagaagtgcc > 1:2196783‑M2/48‑49 (MQ=255) aaacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa < 1:2861722‑M2/4‑1 (MQ=255) aacagctttcgctacgttgctggctcgttttaacacggagaagtgCCTa > 1:2660713‑M2/46‑49 (MQ=255) acagctttcgctacgttgctggctcgttttaacacggagaagtgCCTaca < 1:2234701‑M2/6‑1 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:935987‑M2/43‑49 (MQ=255) agctttcgctacgttgctggctcgttttaacacggagaagtgCCTacac > 1:3529124‑M2/43‑49 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:3398834‑M2/10‑1 (MQ=255) ctttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAg < 1:3624043‑M2/10‑1 (MQ=255) ttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg > 1:6370226‑M2/39‑50 (MQ=255) ttcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg > 1:1432086‑M2/39‑50 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc < 1:4252225‑M2/11‑1 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc < 1:2194756‑M2/11‑1 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGc < 1:3178632‑M2/11‑1 (MQ=255) tcgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCg < 1:2914830‑M2/12‑1 (MQ=255) cgctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCgg > 1:1765020‑M2/37‑49 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:5567536‑M2/36‑50 (MQ=255) gctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGa > 1:1614392‑M2/36‑50 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:2466962‑M2/16‑1 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:827071‑M2/16‑1 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:2773895‑M2/16‑1 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt > 1:3163485‑M2/35‑50 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt > 1:4829409‑M2/35‑50 (MQ=255) ctacgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAt < 1:6651765‑M2/16‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGAtt < 1:4844675‑M2/17‑1 (MQ=255) cgttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCt < 1:5447647‑M2/19‑1 (MQ=255) gttgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtt < 1:3318989‑M2/20‑1 (MQ=255) tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt > 1:1028377‑M2/29‑50 (MQ=255) tgctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt > 1:4161369‑M2/29‑50 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCtttt < 1:4412311‑M2/22‑1 (MQ=255) gctggctcgttttaacacggagaagtgCCTACACAAGCGGGATTCttttt > 1:5808283‑M2/28‑50 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCttttt < 1:1191091‑M2/23‑1 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg > 1:163878‑M2/27‑50 (MQ=255) ctggctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTg < 1:5321220‑M2/24‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt < 1:1338996‑M2/26‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt < 1:1375210‑M2/26‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGtt < 1:4628736‑M2/26‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGt < 1:6503284‑M2/25‑1 (MQ=255) gctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTa < 1:4082205‑M2/27‑1 (MQ=255) ctcgttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTaa < 1:6242623‑M2/28‑1 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc > 1:6581275‑M2/20‑50 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAccc < 1:2672649‑M2/31‑1 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc < 1:6287422‑M2/30‑1 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcc < 1:265409‑M2/30‑1 (MQ=255) gttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAc < 1:114214‑M2/29‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:196737‑M2/32‑1 (MQ=255) ttttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc < 1:2995309‑M2/32‑1 (MQ=255) tttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAAcccc > 1:5261794‑M2/18‑49 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCt < 1:3918850‑M2/33‑1 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa > 1:6126776‑M2/17‑50 (MQ=255) ttaacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa > 1:1723239‑M2/17‑50 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:789669‑M2/34‑1 (MQ=255) taacacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTa < 1:5157004‑M2/34‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAccc < 1:3423899‑M2/37‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc < 1:3191538‑M2/36‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc < 1:2313569‑M2/36‑1 (MQ=255) acacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcc < 1:3001450‑M2/36‑1 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcccc < 1:6369193‑M2/38‑1 (MQ=255) cacggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTAcccc < 1:6269778‑M2/38‑1 (MQ=255) acggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa > 1:1281217‑M2/12‑50 (MQ=255) acggagaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCa > 1:5942591‑M2/12‑50 (MQ=255) agaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCAcgcg > 1:2980775‑M2/8‑50 (MQ=255) gaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGt < 1:4898201‑M2/44‑1 (MQ=255) gaagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGt < 1:4419242‑M2/44‑1 (MQ=255) aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa < 1:1719912‑M2/45‑1 (MQ=255) aagtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTa > 1:4148811‑M2/6‑50 (MQ=255) agtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc < 1:6547057‑M2/46‑1 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTAc > 1:5946075‑M2/4‑49 (MQ=255) gtgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACa < 1:1112927‑M2/47‑1 (MQ=255) tgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa < 1:4238108‑M2/48‑1 (MQ=255) tgCCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACaa < 1:3286975‑M2/48‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc < 1:2342982/50‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc < 1:3295625/50‑1 (MQ=255) ccTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAAcc > 1:1262847/1‑50 (MQ=255) | CAATCATAACCCGTATGTGCAACGCGCTTGCCAGGCGCGAAAGAGCTAACCTACACTAGCGGGATTCTTTTTGTTAACCCCTACCCCACGCGTACAACC > NC_000913/3091006‑3091104 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |