| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,400,289 | Δ7 bp | coding (2‑8/309 nt) | hfq → | RNA‑binding protein Hfq |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4400289 | 4400295 | 7 | 110 [0] | [0] 109 | hfq | RNA‑binding protein Hfq |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4400288 | 0 (0.000) | 103 (1.210) | 59/94 | 0.0 | 100% | coding (1/309 nt) | hfq | RNA‑binding protein Hfq |
| ? | NC_000913 | 4400296 = | 0 (0.000) | coding (9/309 nt) | hfq | RNA‑binding protein Hfq | |||||
Only 100 of 109 total aligned reads displayed.
AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 | agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag < 1:3411049‑M2/1‑1 (MQ=255)agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag > 1:5336740‑M2/50‑50 (MQ=255)agaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaag > 1:4107361‑M2/50‑50 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg < 1:3048613‑M2/2‑1 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg > 1:5804909‑M2/49‑50 (MQ=255) gaatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagg < 1:906641‑M2/2‑1 (MQ=255) aatcgaaaggttcaaagtacaaataagcatataaggaaaagagagaaggg > 1:3860091‑M2/48‑50 (MQ=255) tcgaaaggttcaaagtacaaataagcatataaggaaaagagagaagggg > 1:3071511‑M2/46‑49 (MQ=255) tcgaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGc < 1:4091348‑M2/5‑1 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:2358148‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCaa > 1:5361080‑M2/44‑50 (MQ=255) gaaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCa < 1:948004‑M2/6‑1 (MQ=255) aaaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAAt < 1:451194‑M2/8‑1 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc < 1:1020518‑M2/9‑1 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 1:2053394‑M2/42‑50 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 1:2015447‑M2/42‑50 (MQ=255) aaggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATc > 1:3456976‑M2/42‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt > 1:3480668‑M2/41‑50 (MQ=255) aggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCt < 1:5728846‑M2/10‑1 (MQ=255) ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt < 1:6013090‑M2/11‑1 (MQ=255) ggttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:2397780‑M2/40‑50 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt < 1:250504‑M2/12‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCttt < 1:1326839‑M2/12‑1 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:3244050‑M2/39‑49 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:2169654‑M2/39‑49 (MQ=255) gttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCtt > 1:1201116‑M2/39‑49 (MQ=255) ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa < 1:3798955‑M2/13‑1 (MQ=255) ttcaaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTa < 1:4710753‑M2/13‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:1157683‑M2/35‑48 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:3075493‑M2/35‑48 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACaa < 1:6408220‑M2/16‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACaa < 1:4672670‑M2/16‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACaa < 1:3749994‑M2/16‑1 (MQ=255) aaagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACa < 1:6616874‑M2/15‑1 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:436439‑M2/34‑47 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg < 1:4109535‑M2/17‑1 (MQ=255) aagtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAg < 1:1946410‑M2/17‑1 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:770995‑M2/33‑46 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:1818333‑M2/33‑46 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:4417893‑M2/18‑1 (MQ=255) agtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGa < 1:1384144‑M2/18‑1 (MQ=255) gtacaaataagcatataaggaaaagagagaaGGGGCAATCTTTAc > 1:4335925‑M2/32‑45 (MQ=255) tacaaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATc < 1:1199791‑M2/20‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATcc < 1:5453402‑M2/21‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg < 1:5413269‑M2/22‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg > 1:1568417‑M2/29‑50 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg < 1:5051290‑M2/22‑1 (MQ=255) caaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCg < 1:6482891‑M2/22‑1 (MQ=255) aaataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGt < 1:4326497‑M2/23‑1 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:145014‑M2/27‑50 (MQ=255) aataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGtt > 1:5505646‑M2/27‑50 (MQ=255) ataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTc > 1:4958084‑M2/26‑50 (MQ=255) ataagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTc > 1:1909535‑M2/26‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc > 1:342985‑M2/25‑50 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc < 1:1973986‑M2/26‑1 (MQ=255) taagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTcc < 1:2144867‑M2/26‑1 (MQ=255) aagcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCt > 1:5307561‑M2/24‑50 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:1800110‑M2/29‑1 (MQ=255) gcatataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGa < 1:5397128‑M2/29‑1 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:1031710‑M2/21‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:2314208‑M2/21‑50 (MQ=255) catataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGaa > 1:2848743‑M2/21‑50 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 1:2222862‑M2/31‑1 (MQ=255) atataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAAc < 1:1049369‑M2/31‑1 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg < 1:3188369‑M2/32‑1 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:6218590‑M2/19‑50 (MQ=255) tataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:2618556‑M2/19‑50 (MQ=255) ataaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACg > 1:6679680‑M2/18‑49 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGc < 1:1867443‑M2/33‑1 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGc < 1:628514‑M2/33‑1 (MQ=255) taaggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGc < 1:905520‑M2/33‑1 (MQ=255) aggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACt < 1:6129971‑M2/36‑1 (MQ=255) ggaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTg > 1:3753864‑M2/14‑50 (MQ=255) gaaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGc < 1:2913804‑M2/38‑1 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg < 1:1951005‑M2/39‑1 (MQ=255) aaaagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCg < 1:751452‑M2/39‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:1833727‑M2/10‑50 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:6732740‑M2/41‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:723008‑M2/10‑50 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc < 1:5829301‑M2/41‑1 (MQ=255) aagagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTc > 1:4557218‑M2/10‑50 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:1593569‑M2/9‑50 (MQ=255) agagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCg > 1:456372‑M2/9‑50 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:3930755‑M2/8‑50 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:4921760‑M2/8‑50 (MQ=255) gagagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCgg > 1:4027253‑M2/8‑50 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCggg > 1:4114139‑M2/6‑49 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCggg > 1:5393088‑M2/6‑49 (MQ=255) gagaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGa < 1:4394205‑M2/45‑1 (MQ=255) agaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGaa < 1:150872‑M2/46‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc > 1:4045418‑M2/4‑50 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:6612281‑M2/47‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:6253090‑M2/47‑1 (MQ=255) gaaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAAc < 1:526513‑M2/47‑1 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg > 1:745465‑M2/3‑50 (MQ=255) aaGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACg < 1:334202‑M2/48‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt > 1:1846476‑M2/2‑50 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt < 1:2567293‑M2/49‑1 (MQ=255) aGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGt > 1:3131621‑M2/2‑50 (MQ=255) ggggCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACgtg > 1:4183279/1‑50 (MQ=255) | AAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCGGGAACGTG > NC_000913/4400247‑4400345 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |