BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	4,400,289	Δ7 bp	coding (2‑8/309 nt)	hfq →	RNA‑binding protein Hfq

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	4400289	4400295	7	110 [0]	[0] 109	hfq	RNA‑binding protein Hfq

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4400288	0 (0.000)	103 (1.210)	59/94	0.0	100%	coding (1/309 nt)	hfq	RNA‑binding protein Hfq
*	?	NC_000913	4400296 =	0 (0.000)	103 (1.210)	59/94	0.0	100%	coding (9/309 nt)	hfq	RNA‑binding protein Hfq

Only 100 of 110 total aligned reads displayed.

AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG  >  NC_000913/4400240‑4400337

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg                                                  <  1:3411049‑M1/50‑2 (MQ=255)

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg                                                  >  1:4107361‑M1/1‑49 (MQ=255)

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAg                                                  >  1:5336740‑M1/1‑49 (MQ=255)

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA                                                   <  1:2131471‑M1/49‑1 (MQ=255)

aGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAA                                                   <  1:3086460‑M1/49‑1 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:906641‑M1/50‑3 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 >  1:5804909‑M1/1‑48 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:4728699‑M1/50‑3 (MQ=255)

 gAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgg                                                 <  1:3048613‑M1/50‑3 (MQ=255)

    tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggc                                              <  1:4091348‑M1/50‑6 (MQ=255)

    tCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAgggg                                               >  1:3071511‑M1/1‑45 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:5361080‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:2358148‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaa                                            >  1:2123211‑M1/1‑43 (MQ=255)

      gAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggca                                             <  1:948004‑M1/49‑7 (MQ=255)

       aaaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaat                                           <  1:451194‑M1/50‑9 (MQ=255)

        aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          >  1:2053394‑M1/1‑41 (MQ=255)

        aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          >  1:3456976‑M1/1‑41 (MQ=255)

        aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          >  1:2015447‑M1/1‑41 (MQ=255)

        aaGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatc                                          <  1:1020518‑M1/50‑10 (MQ=255)

         aGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatct                                         >  1:3480668‑M1/1‑40 (MQ=255)

          ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        <  1:6013090‑M1/50‑12 (MQ=255)

          ggTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        >  1:2397780‑M1/1‑39 (MQ=255)

           gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttt                                       <  1:1326839‑M1/50‑13 (MQ=255)

           gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        >  1:2169654‑M1/1‑38 (MQ=255)

           gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        >  1:3244050‑M1/1‑38 (MQ=255)

           gTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctt                                        >  1:1201116‑M1/1‑38 (MQ=255)

            ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      <  1:4710753‑M1/50‑14 (MQ=255)

            ttCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatcttta                                      <  1:3798955‑M1/50‑14 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa                                   <  1:6408220‑M1/50‑17 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa                                   <  1:3749994‑M1/50‑17 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaa                                   <  1:4672670‑M1/50‑17 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttaca                                    <  1:6616874‑M1/49‑16 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:1157683‑M1/1‑34 (MQ=255)

               aaaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:3075493‑M1/1‑34 (MQ=255)

                aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaag                                  <  1:1946410‑M1/50‑18 (MQ=255)

                aaGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaag                                  <  1:4109535‑M1/50‑18 (MQ=255)

                 aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaaga                                 <  1:1384144‑M1/50‑19 (MQ=255)

                 aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaaga                                 <  1:4417893‑M1/50‑19 (MQ=255)

                 aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:770995‑M1/1‑32 (MQ=255)

                 aGTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:1818333‑M1/1‑32 (MQ=255)

                  gTACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttac                                     >  1:4335925‑M1/1‑31 (MQ=255)

                   tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc                               <  1:1199791‑M1/50‑21 (MQ=255)

                   tACAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatc                               <  1:1770565‑M1/50‑21 (MQ=255)

                     cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg                             <  1:5413269‑M1/50‑23 (MQ=255)

                     cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccg                             <  1:6482891‑M1/50‑23 (MQ=255)

                     cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc                              <  1:3592840‑M1/49‑22 (MQ=255)

                     cAAATAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatcc                              <  1:5453402‑M1/49‑22 (MQ=255)

                      aaaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgt                            <  1:4326497‑M1/50‑24 (MQ=255)

                       aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt                           >  1:5505646‑M1/1‑26 (MQ=255)

                       aaTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgtt                           >  1:145014‑M1/1‑26 (MQ=255)

                        aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc                          >  1:4958084‑M1/1‑25 (MQ=255)

                        aTAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttc                          >  1:1909535‑M1/1‑25 (MQ=255)

                         tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc                         >  1:342985‑M1/1‑24 (MQ=255)

                         tAAGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcc                         <  1:2144867‑M1/50‑27 (MQ=255)

                          aaGCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcct                        >  1:5307561‑M1/1‑23 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:1800110‑M1/50‑30 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:5397128‑M1/50‑30 (MQ=255)

                            gCATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctga                      <  1:415815‑M1/50‑30 (MQ=255)

                             cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa                     >  1:1031710‑M1/1‑20 (MQ=255)

                             cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa                     >  1:2314208‑M1/1‑20 (MQ=255)

                             cATATAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaa                     >  1:2848743‑M1/1‑20 (MQ=255)

                              atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac                    <  1:2222862‑M1/50‑32 (MQ=255)

                              atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac                    <  1:1049369‑M1/50‑32 (MQ=255)

                              atatAAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaac                    >  1:5484911‑M1/1‑19 (MQ=255)

                               tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg                   >  1:6218590‑M1/1‑18 (MQ=255)

                               tataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg                   >  1:2618556‑M1/1‑18 (MQ=255)

                                ataAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacg                   >  1:6679680‑M1/1‑17 (MQ=255)

                                 taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgc                  <  1:905520‑M1/49‑34 (MQ=255)

                                 taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgc                  <  1:628514‑M1/49‑34 (MQ=255)

                                 taAGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgc                  <  1:1867443‑M1/49‑34 (MQ=255)

                                   aGGAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcact               <  1:6129971‑M1/50‑37 (MQ=255)

                                    ggAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactg              >  1:3753864‑M1/1‑13 (MQ=255)

                                     gAAAAGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgc             <  1:2913804‑M1/50‑39 (MQ=255)

                                      aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg            <  1:751452‑M1/50‑40 (MQ=255)

                                      aaaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcg            <  1:1951005‑M1/50‑40 (MQ=255)

                                       aaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgt           <  1:3029630‑M1/50‑41 (MQ=255)

                                       aaaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgt           <  1:6543796‑M1/50‑41 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:6732740‑M1/50‑42 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          >  1:723008‑M1/1‑9 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          >  1:1833727‑M1/1‑9 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          >  1:4557218‑M1/1‑9 (MQ=255)

                                        aaGAGAGAAggggcaatctttacaagatccgttcctgaacgcactgcgtc          <  1:5829301‑M1/50‑42 (MQ=255)

                                         agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg         >  1:456372‑M1/1‑8 (MQ=255)

                                         agagagAAggggcaatctttacaagatccgttcctgaacgcactgcgtcg         >  1:1593569‑M1/1‑8 (MQ=255)

                                          gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:3930755‑M1/1‑7 (MQ=255)

                                          gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:4921760‑M1/1‑7 (MQ=255)

                                          gagagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgg        >  1:4027253‑M1/1‑7 (MQ=255)

                                            gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggga      <  1:4394205‑M1/50‑46 (MQ=255)

                                            gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggg       >  1:5393088‑M1/1‑5 (MQ=255)

                                            gagaAggggcaatctttacaagatccgttcctgaacgcactgcgtcggg       >  1:4114139‑M1/1‑5 (MQ=255)

                                             agaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaa     <  1:150872‑M1/50‑47 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:6253090‑M1/50‑48 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    >  1:4045418‑M1/1‑3 (MQ=255)

                                              gaAggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaac    <  1:526513‑M1/50‑48 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   >  1:745465‑M1/1‑2 (MQ=255)

                                               aaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacg   <  1:334202‑M1/50‑49 (MQ=255)

                                                aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt  >  1:1846476‑M1/1‑1 (MQ=255)

                                                aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt  <  1:2567293‑M1/50‑50 (MQ=255)

                                                aggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgt  >  1:3131621‑M1/1‑1 (MQ=255)

AGAATCGAAAGGTTCAAAGTACAAATAAGCATATAAGGAAAAGAGAGAATGGCTAAGGGGCAATCTTTACAAGATCCGTTCCTGAACGCACTGCGTCG  >  NC_000913/4400240‑4400337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`