| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 729,365 | Δ9,598 bp | rhsC–ybfD | rhsC, ybfB, ybfO, ybfC, ybfQ, ybfL, ybfD | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 729365 | 738962 | 9598 | 107 [0] | [0] 107 | rhsC–ybfD | rhsC,ybfB,ybfO,ybfC,ybfQ,ybfL,ybfD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 729364 | 0 (0.000) | 101 (1.190) | 60/94 | 0.0 | 100% | intergenic (+24/‑219) | ybfA/rhsC | DUF2517 domain‑containing protein YbfA/rhs element protein RhsC |
| ? | NC_000913 | 738963 = | 0 (0.000) | intergenic (+110/‑38) | ybfD/ybgA | H repeat‑associated putative transposase YbfD/DUF1722 domain‑containing protein YbgA | |||||
Only 100 of 107 total aligned reads displayed.
AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729315‑729413 | aaaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAA < 1:4316938‑M1/50‑1 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:2397218‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:5471310‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc < 1:5114018‑M1/50‑2 (MQ=255) aaaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAc > 1:4903948‑M1/1‑49 (MQ=255) aaGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcg > 1:1366787‑M1/1‑48 (MQ=255) aGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgt > 1:4463363‑M1/1‑47 (MQ=255) aGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgt < 1:4534487‑M1/50‑4 (MQ=255) gCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtct < 1:6571628‑M1/50‑6 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:2526109‑M1/1‑44 (MQ=255) cAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:1746522‑M1/1‑44 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctac < 1:4959489‑M1/50‑8 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctac < 1:3712807‑M1/50‑8 (MQ=255) aaCTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtcta > 1:417911‑M1/1‑43 (MQ=255) cTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacac < 1:4734086‑M1/50‑10 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactta > 1:5090493‑M1/1‑38 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 1:4482392‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacactt < 1:5766363‑M1/49‑12 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:5457944‑M1/48‑11 (MQ=255) gTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacact < 1:326935‑M1/48‑11 (MQ=255) tGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttac > 1:6634126‑M1/1‑37 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc > 1:2152547‑M1/1‑35 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactc > 1:2255797‑M1/1‑35 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact < 1:4180291‑M1/49‑15 (MQ=255) aTTTTTATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttact < 1:3989939‑M1/49‑15 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc < 1:821255‑M1/50‑17 (MQ=255) tttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcc > 1:2646008‑M1/1‑34 (MQ=255) ttttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcct > 1:4977262‑M1/1‑33 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:5831134‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:4079646‑M1/1‑32 (MQ=255) tttATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctg > 1:6445690‑M1/1‑32 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctgt < 1:5698972‑M1/49‑20 (MQ=255) tATTGATTGCTGAGTTTTGAATACATTGAAcgtctacacttactcctgt > 1:619198‑M1/1‑30 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta > 1:1357224‑M1/1‑29 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta < 1:1270580‑M1/49‑21 (MQ=255) attgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgta > 1:4464360‑M1/1‑29 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa > 1:2555734‑M1/1‑28 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa < 1:4540301‑M1/50‑23 (MQ=255) ttgattgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaa < 1:2070395‑M1/50‑23 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg < 1:1299344‑M1/50‑26 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:383793‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg > 1:2216077‑M1/1‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccg < 1:4861497‑M1/50‑26 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:352038‑M1/49‑25 (MQ=255) attgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaacc < 1:4141545‑M1/49‑25 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:6559250‑M1/1‑23 (MQ=255) tgCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:4079014‑M1/1‑23 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 1:2987885‑M1/49‑28 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct < 1:3590880‑M1/49‑28 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:2898443‑M1/1‑22 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:2875926‑M1/1‑22 (MQ=255) gCTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:5180241‑M1/1‑22 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctca < 1:2732013‑M1/50‑30 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctc < 1:4078915‑M1/49‑29 (MQ=255) cTGAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgct > 1:5598608‑M1/1‑21 (MQ=255) gAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:1249167‑M1/1‑19 (MQ=255) gAGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:509237‑M1/1‑19 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:6492362‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:5886728‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagga < 1:5896038‑M1/50‑33 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagg < 1:2319316‑M1/49‑32 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcagg < 1:1129707‑M1/49‑32 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:5526631‑M1/1‑18 (MQ=255) aGTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcag > 1:1070610‑M1/1‑18 (MQ=255) aGTTTTGAATACATTGAAcgtatacacttactcctgtaaaccgctcag < 1:2013065‑M1/48‑31 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:643320‑M1/1‑17 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag < 1:2243786‑M1/50‑34 (MQ=255) gTTTTGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:2169981‑M1/1‑17 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:4941744‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:1362186‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:6726089‑M1/1‑15 (MQ=255) tttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggag > 1:1202698‑M1/1‑15 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:6675072‑M1/1‑14 (MQ=255) ttGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:563226‑M1/1‑14 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag < 1:2508634‑M1/49‑37 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag < 1:3306017‑M1/49‑37 (MQ=255) tGAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcag > 1:6422729‑M1/1‑13 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:5218775‑M1/1‑12 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt < 1:4936858‑M1/49‑38 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt < 1:5159009‑M1/49‑38 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:1462036‑M1/1‑12 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:3458516‑M1/1‑12 (MQ=255) gAATACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagt > 1:5398654‑M1/1‑12 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa > 1:1232102‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa > 1:6662378‑M1/1‑11 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaa < 1:1928729‑M1/50‑40 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:1404561‑M1/49‑39 (MQ=255) aaTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagta < 1:4384795‑M1/49‑39 (MQ=255) aTACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaat > 1:6714539‑M1/1‑10 (MQ=255) tACATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatg < 1:2921534‑M1/50‑42 (MQ=255) cATTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaa < 1:6746819‑M1/50‑44 (MQ=255) aTTGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaat < 1:6339064‑M1/50‑45 (MQ=255) tGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc > 1:232733‑M1/1‑4 (MQ=255) tGAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatc > 1:3594918‑M1/1‑4 (MQ=255) gAAcgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:5540648‑M1/1‑3 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:1694233‑M1/1‑2 (MQ=255) aacgtctacacttactcctgtaaaccgctcaggagcagtaatgaatcta > 1:4460224‑M1/1‑2 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:1218659‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:5386247‑M1/50‑50 (MQ=255) acgtctacacttactcctgtaaaccgctcaggagcagtaatgaatctaca < 1:474450‑M1/50‑50 (MQ=255) | AAAAGGCAACTGGTGATTTTTATTGATTGCTGAGTTTTGAATACATTGAAAACCGCCAGCGGAAACGCTGGCGGTTTTTTGTATCAGGAAGATGTTCAG > NC_000913/729315‑729413 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |