Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1997091	2023681	26591	43 [38]	[41] 43	[tcyN]–fliR	[tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,fliR

GTCGGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCC  >  NC_000913/1997041‑1997138                                                  |                                                 gtcgGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACt                                                  >  1:2701821/1‑50 (MQ=255) gtcgGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACt                                                  <  1:350440/50‑1 (MQ=255) gtcgGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACt                                                  >  1:3574209/1‑50 (MQ=255) gtcgGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACt                                                  >  1:215839/1‑50 (MQ=255) gtcgGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACt                                                  >  1:1434310/1‑50 (MQ=255)     gggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCg                                              >  1:1992678/1‑50 (MQ=255)     gggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCg                                              <  1:5078360/50‑1 (MQ=255)     gggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCg                                              >  1:3023579/1‑50 (MQ=255)     gggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCg                                              >  1:3230819/1‑50 (MQ=255)     gggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCg                                              >  1:4413761/1‑50 (MQ=255)      ggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCgg                                             <  1:5522476/50‑1 (MQ=255)      ggCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCgg                                             >  1:2857865/1‑50 (MQ=255)       gCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCggg                                            >  1:6001471/1‑50 (MQ=255)       gCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCggg                                            >  1:5054382/1‑50 (MQ=255)       gCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCggg                                            >  1:4627913/1‑50 (MQ=255)         tGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCggggg                                          >  1:959308/1‑48 (MQ=255)         tGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTg                                          >  1:1801134/1‑50 (MQ=255)          gATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGc                                         >  1:3814951/1‑50 (MQ=255)           aTTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGc                                         >  1:4784090/1‑49 (MQ=255)             tttttCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGCGAg                                      >  1:4639416/1‑50 (MQ=255)              ttttCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAg                                      <  1:6215696/49‑1 (MQ=255)              ttttCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAg                                      <  1:6082703/49‑1 (MQ=255)               tttCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAgg                                     <  1:6149935/49‑1 (MQ=255)                 tCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGgctg                                  >  1:4222511/1‑50 (MQ=255)                 tCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGgctg                                  >  1:749271/1‑50 (MQ=255)                      ttattGCAGCAGAAACTTCTCGAGGAACTGGCGGGGGGGAGGGTGGTCgg                             >  1:6054799/1‑50 (MQ=37)                         ttGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttc                          >  1:4060274‑M1/1‑47 (MQ=255)                           gcagcaGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttcc                         <  1:871268‑M1/49‑5 (MQ=255)                            cagcagAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCCCGGttccg                        >  1:2332531‑M1/1‑44 (MQ=255)                               cagAAACTTCTCGAGGAACTGGCGGGCGCGAGGCCGCTCGGttccggaac                    >  1:6318070‑M1/1‑41 (MQ=255)                                agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg                   <  1:3417350‑M1/50‑11 (MQ=255)                                agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg                   >  1:2480136‑M1/1‑40 (MQ=255)                                agAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacg                   <  1:6346775‑M1/50‑11 (MQ=255)                                 gAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgt                  <  1:6493128‑M1/50‑12 (MQ=255)                                   aaCTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgttt                <  1:2814480‑M1/50‑14 (MQ=255)                                   aaCTTCTCGAGGAACTGGCGGGGGCGCGGCTGCTCGGttccctaacgttt                >  1:3376462‑M1/1‑37 (MQ=255)                                           gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtt        <  1:3531707‑M1/50‑22 (MQ=255)                                           gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgtt        <  1:4321187‑M1/50‑22 (MQ=255)                                           gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg          <  1:2228302‑M1/48‑20 (MQ=255)                                           gAGGAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatg          <  1:5897722‑M1/48‑20 (MQ=255)                                             ggAACTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttat      <  1:3440703‑M1/50‑24 (MQ=255)                                               aaCTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatcc    >  1:1832077‑M1/1‑25 (MQ=255)                                                 cTGGCGGGTGCGAGGCTGCTCGGttccgtaacgtttatcatgttatccta  <  1:321619‑M1/50‑28 (MQ=255)                                                  |                                                 GTCGGGGCTGATTTTTTCTTATTATTGCAGCAGAAACTTCTCGAGGAACTGGCGGGTGCGAGGCTGCTCGGGGTCGGCAAATAACGCTTTTGCGGCCC  >  NC_000913/1997041‑1997138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑