Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1997091	2023681	26591	43 [38]	[41] 43	[tcyN]–fliR	[tcyN],tcyL,dcyD,tcyJ,fliZ,fliA,fliC,fliD,fliS,fliT,amyA,yedD,yedE,yedF,yedK,yedL,yedN,intG,fliE,fliF,fliG,fliH,fliI,fliJ,fliK,fliL,fliM,fliN,fliO,fliP,fliQ,fliR

TTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTAC  >  NC_000913/2023634‑2023731                                                 |                                                  gcagcagaaacttctcgaggaactggcgggtgcgaggctgctcggTTcc                                                   <  1:871268‑M2/4‑1 (MQ=255)  cagcagaaacttctcgaggaactggcgggtgcgaggctgcccggTTCCg                                                  >  1:2332531‑M2/45‑49 (MQ=255)     cagaaacttctcgaggaactggcgggcgcgaggccgctcggTTCCGGAAc                                              >  1:6318070‑M2/42‑50 (MQ=255)      agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                             >  1:2480136‑M2/41‑50 (MQ=255)      agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                             <  1:6346775‑M2/10‑1 (MQ=255)      agaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACg                                             <  1:3417350‑M2/10‑1 (MQ=255)       gaaacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGt                                            <  1:6493128‑M2/11‑1 (MQ=255)         aacttctcgaggaactggcgggtgcgaggctgctcggTTCCGTAACGttt                                          <  1:2814480‑M2/13‑1 (MQ=255)         aacttctcgaggaactggcgggggcgcggctgctcggTTCCCTAACGttt                                          >  1:3376462‑M2/38‑50 (MQ=255)                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg                                    <  1:2228302‑M2/19‑1 (MQ=255)                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATg                                    <  1:5897722‑M2/19‑1 (MQ=255)                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                                  <  1:4321187‑M2/21‑1 (MQ=255)                 gaggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGtt                                  <  1:3531707‑M2/21‑1 (MQ=255)                   ggaactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTAt                                <  1:3440703‑M2/23‑1 (MQ=255)                     aactggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATcc                              >  1:1832077‑M2/26‑50 (MQ=255)                       ctggcgggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTa                            <  1:321619‑M2/27‑1 (MQ=255)                            gggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAt                       >  1:1873997‑M2/19‑50 (MQ=255)                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                      <  1:622103‑M2/33‑1 (MQ=255)                             ggtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGAtt                      <  1:5048318‑M2/33‑1 (MQ=255)                              gtgcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTa                     <  1:5319186‑M2/34‑1 (MQ=255)                                gcgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                   >  1:1149002‑M2/15‑50 (MQ=255)                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATcc                  <  1:265621‑M2/37‑1 (MQ=255)                                 cgaggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATc                   <  1:6191177‑M2/36‑1 (MQ=255)                                   aggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa                <  1:5301358‑M2/39‑1 (MQ=255)                                    ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa                >  1:3055859‑M2/11‑49 (MQ=255)                                    ggctgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGa                >  1:6389009‑M2/11‑49 (MQ=255)                                       tgctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa            >  1:1875434‑M2/8‑50 (MQ=255)                                        gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa            >  1:6628212‑M2/7‑49 (MQ=255)                                        gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa            >  1:1292002‑M2/7‑49 (MQ=255)                                        gctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa            >  1:4994281‑M2/7‑49 (MQ=255)                                         ctcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGaaaaa            <  1:455803‑M2/43‑1 (MQ=255)                                          tcggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa         >  1:4465853‑M2/5‑50 (MQ=255)                                           cggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAaataa         >  1:3597082‑M2/4‑49 (MQ=255)                                            ggTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAataata       >  1:5761685‑M2/3‑50 (MQ=255)                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc      >  1:5686599‑M2/2‑50 (MQ=255)                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc      <  1:272940‑M2/49‑1 (MQ=255)                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc      >  1:791649‑M2/2‑50 (MQ=255)                                             gTTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATAc      <  1:1368661‑M2/49‑1 (MQ=255)                                             gTTCCGTAACGTTTATCATCTTATCCTAAGGATTATCCGAAAAATAATAc      <  1:2293883‑M2/49‑1 (MQ=255)                                                ccGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCt    <  1:2292/49‑1 (MQ=255)                                                 cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTa   <  1:3647890/49‑1 (MQ=255)                                                 cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTAc  <  1:3846526/50‑1 (MQ=255)                                                 cGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTAc  >  1:3652464/1‑50 (MQ=255)                                                 |                                                  TTTAATTTGCTGGCTGATATTATTAGTGAATTGCCATTAATATAATTCCGTAACGTTTATCATGTTATCCTAAGGATTATCCGAAAAATAATACCTAC  >  NC_000913/2023634‑2023731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑