| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 2,320,144 | Δ16,489 bp | [atoS]–[yfaA] | [atoS], atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaS, yfaT, [yfaA] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 2320144 | 2336632 | 16489 | 115 [0] | [0] 114 | [atoS]–[yfaA] | [atoS],atoC,atoD,atoA,atoE,atoB,yfaP,yfaQ,yfaS,yfaT,[yfaA] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2320143 | 0 (0.000) | 111 (1.280) | 69/96 | 0.0 | 100% | coding (101/1827 nt) | atoS | sensory histidine kinase AtoS |
| ? | NC_000913 | 2336633 = | 0 (0.000) | coding (12/1689 nt) | yfaA | DUF2138 domain‑containing protein YfaA | |||||
Only 100 of 115 total aligned reads displayed.
CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 | tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:131483‑M1/1‑49 (MQ=255) tGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATt > 1:5960057‑M1/1‑49 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 1:2909201‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATtt < 1:1317087‑M1/49‑3 (MQ=255) aTGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTAGTTATATttc < 1:6425730‑M1/50‑4 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:4368189‑M1/50‑5 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca > 1:3467414‑M1/1‑46 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:3926633‑M1/50‑5 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:3885507‑M1/50‑5 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca < 1:1869629‑M1/50‑5 (MQ=255) tGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttca > 1:3632288‑M1/1‑46 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacc < 1:2180597‑M1/50‑7 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:523292‑M1/49‑6 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac > 1:4782229‑M1/1‑44 (MQ=255) gCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcac < 1:5953951‑M1/49‑6 (MQ=255) cAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcacca > 1:243416‑M1/1‑43 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:1587612‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:513131‑M1/1‑42 (MQ=255) aaTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccac > 1:6567482‑M1/1‑42 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:5957100‑M1/1‑41 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact < 1:4646370‑M1/50‑10 (MQ=255) aTCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:2791212‑M1/1‑41 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:813754‑M1/50‑11 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactc < 1:5827736‑M1/50‑11 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:866887‑M1/1‑40 (MQ=255) tCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccact > 1:242651‑M1/1‑40 (MQ=255) cTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcat > 1:2274091‑M1/1‑38 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:1489821‑M1/1‑37 (MQ=255) tGATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt > 1:345380‑M1/1‑37 (MQ=255) gATGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg > 1:3687718‑M1/1‑36 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgc > 1:804966‑M1/1‑35 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:1119122‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattg < 1:19147‑M1/49‑15 (MQ=255) aTGGTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcatt < 1:5256756‑M1/48‑14 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccac < 1:4196511‑M1/50‑19 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca < 1:174222‑M1/49‑18 (MQ=255) gTCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgcca < 1:4988878‑M1/49‑18 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:3742745‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:4319150‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca < 1:3919516‑M1/50‑20 (MQ=255) tCATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccaca > 1:5905415‑M1/1‑31 (MQ=255) cATTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat > 1:5975638‑M1/1‑30 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacatt > 1:4828689‑M1/1‑29 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:1421345‑M1/49‑21 (MQ=255) aTTGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacat < 1:5124242‑M1/49‑21 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc < 1:3516881‑M1/50‑23 (MQ=255) ttGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattc > 1:3702282‑M1/1‑28 (MQ=255) tGTCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcc > 1:6583470‑M1/1‑27 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcctt < 1:1299163‑M1/50‑26 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:3803617‑M1/49‑25 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:860432‑M1/49‑25 (MQ=255) tCCCAACGCTTACTATTGGTTATATttcaccactcattgccacattcct < 1:6427101‑M1/49‑25 (MQ=255) cccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttg > 1:5591220‑M1/1‑24 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt < 1:1870040‑M1/50‑28 (MQ=255) ccAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgt > 1:4189785‑M1/1‑23 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:4096273‑M1/1‑22 (MQ=255) cAACGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg < 1:2229596‑M1/50‑29 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgt < 1:4651672‑M1/50‑30 (MQ=255) aaCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtg > 1:6746187‑M1/1‑21 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta < 1:4800214‑M1/50‑31 (MQ=255) aCGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgta > 1:4656561‑M1/1‑20 (MQ=255) cGCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtat < 1:2828977‑M1/50‑32 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:2636948‑M1/50‑33 (MQ=255) gCTTACTATTGGTTATATttcaccactcattgccacattccttgtgtata < 1:2255360‑M1/50‑33 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag < 1:539829‑M1/50‑34 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag < 1:4569834‑M1/50‑34 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:5502714‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:692266‑M1/1‑17 (MQ=255) cTTACTATTGGTTATATttcaccactcattgccacattccttgtgtatag > 1:3367159‑M1/1‑17 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagcc < 1:1487926‑M1/49‑36 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagcc < 1:6252051‑M1/49‑36 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc < 1:4008722‑M1/48‑35 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:314547‑M1/1‑14 (MQ=255) aCTATTGGTTATATttcaccactcattgccacattccttgtgtatagc > 1:1973840‑M1/1‑14 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagcca < 1:4198638‑M1/49‑37 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagcca < 1:1052658‑M1/49‑37 (MQ=255) cTATTGGTTATATttcaccactcattgccacattccttgtgtatagcca < 1:3446542‑M1/49‑37 (MQ=255) tATTGGTTATATttcaccactcattgccacattccttgtgtatagccagc > 1:3885383‑M1/1‑12 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcca < 1:279531‑M1/50‑41 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:1219095‑M1/49‑40 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:1884456‑M1/49‑40 (MQ=255) ttGGTTATATttcaccactcattgccacattccttgtgtatagccagcc < 1:608665‑M1/49‑40 (MQ=255) tGGTTATATttcaccactcattgccacattccttgtgtatagccagccat > 1:2501836‑M1/1‑9 (MQ=255) tGGTTATATttcaccactcattgccacattccttgtgtatagccagccat > 1:169014‑M1/1‑9 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagctagccatt > 1:3938528‑M1/1‑8 (MQ=255) ggTTATATttcaccactcattgccacattccttgtgtatagccagccatt > 1:3207938‑M1/1‑8 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccattt > 1:108208‑M1/1‑7 (MQ=255) gTTATATttcaccactcattgccacattccttgtgtatagccagccatt < 1:6580699‑M1/49‑43 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt > 1:4070219‑M1/1‑6 (MQ=255) ttATATttcaccactcattgccacattccttgtgtatagccagccatttt < 1:4676266‑M1/50‑45 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:6091080‑M1/1‑5 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:5086474‑M1/1‑5 (MQ=255) tataTttcaccactcattgccacattccttgtgtatagccagccattttt > 1:5011998‑M1/1‑5 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttta > 1:5767793‑M1/1‑3 (MQ=255) tatttcaccactcattgccacattccttgtgtatagccagccatttttt < 1:3532259‑M1/49‑47 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:4023868‑M1/1‑2 (MQ=255) atttcaccactcattgccacattccttgtgtatagccagccattttttac > 1:5564051‑M1/1‑2 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg < 1:3112345‑M1/50‑50 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg < 1:6143442‑M1/50‑50 (MQ=255) tttcaccactcattgccacattccttgtgtatagccagccattttttacg > 1:1526828‑M1/1‑1 (MQ=255) | CTGATGGCAATCCTGATGGTCATTGTCCCAACGCTTACTATTGGTTATATCGTAGAAACGGAAGGACGTTCAGCAGTCTTATCTGAAAAAGAGAAAAAA > NC_000913/2320094‑2320192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |