| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 108 [0] | [0] 106 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 101 (1.160) | 62/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 108 total aligned reads displayed.
TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 | tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:5669942‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:570806‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTa < 1:4468704‑M1/50‑2 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:755883‑M1/1‑49 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT < 1:6660382‑M1/49‑1 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:4894664‑M1/1‑49 (MQ=255)tttAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGT > 1:146471‑M1/1‑49 (MQ=255) tAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaa < 1:6056155‑M1/49‑3 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaagg > 1:1235953‑M1/1‑46 (MQ=255) aGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaag < 1:5017133‑M1/49‑4 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc < 1:5385608‑M1/50‑6 (MQ=255) gCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:6029573‑M1/1‑45 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcg < 1:1175141‑M1/50‑7 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1484997‑M1/1‑44 (MQ=255) cTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGCAGTaaggc > 1:4335650‑M1/1‑44 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:6255419‑M1/1‑43 (MQ=255) tATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:1803412‑M1/1‑43 (MQ=255) aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:2938580‑M1/1‑42 (MQ=255) aTCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:522650‑M1/1‑42 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgag < 1:1644913‑M1/49‑9 (MQ=255) tCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggc > 1:42789‑M1/1‑41 (MQ=255) gTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatta > 1:1769193‑M1/1‑38 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:1199164‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:3659603‑M1/1‑37 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagatt < 1:5794042‑M1/48‑12 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga < 1:396840‑M1/46‑10 (MQ=255) tataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgaga < 1:2392873‑M1/46‑10 (MQ=255) ataACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattat > 1:3404035‑M1/1‑36 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatta < 1:720853‑M1/50‑16 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:4894322‑M1/49‑15 (MQ=255) taACCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattatt < 1:4664012‑M1/49‑15 (MQ=255) aCCTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaa < 1:127600‑M1/49‑17 (MQ=255) ccTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaag > 1:1435125‑M1/1‑32 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:5164118‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:1870264‑M1/1‑31 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt < 1:3236839‑M1/50‑20 (MQ=255) cTGAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagt > 1:3359730‑M1/1‑31 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 1:1575459‑M1/1‑29 (MQ=255) gAATGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg > 1:6669553‑M1/1‑29 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:4751424‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc > 1:60556‑M1/1‑28 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgc < 1:3167691‑M1/50‑23 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg < 1:5441652‑M1/49‑22 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttg < 1:2600940‑M1/49‑22 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:4136724‑M1/48‑21 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:1086121‑M1/48‑21 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:3400061‑M1/48‑21 (MQ=255) aaTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagtt < 1:2714440‑M1/48‑21 (MQ=255) aTGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcc < 1:515032‑M1/50‑24 (MQ=255) tGTTAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgcca < 1:434277‑M1/50‑25 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 1:5031273‑M1/50‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg < 1:4151046‑M1/50‑27 (MQ=255) ttAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccat < 1:1991435‑M1/49‑26 (MQ=255) tAGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:4413534‑M1/1‑23 (MQ=255) aGTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatg > 1:361282‑M1/1‑22 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag < 1:1711966‑M1/50‑30 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag > 1:4221806‑M1/1‑21 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcag > 1:4396102‑M1/1‑21 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:3166776‑M1/49‑29 (MQ=255) gTACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgca < 1:3369071‑M1/49‑29 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc > 1:1681670‑M1/1‑20 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:1093667‑M1/50‑31 (MQ=255) tACTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagc < 1:5260795‑M1/50‑31 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:1224295‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:5154723‑M1/1‑19 (MQ=255) aCTCATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcg > 1:417324‑M1/1‑19 (MQ=255) cATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc > 1:6192872‑M1/1‑16 (MQ=255) cATTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc > 1:6389875‑M1/1‑16 (MQ=255) aTTCTTCCTGGTAGTaaggcgagattattaaagttgccatgcagcgtcc < 1:6285913‑M1/49‑35 (MQ=255) ttcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgg > 1:3325551‑M1/1‑14 (MQ=255) tcttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg > 1:1655839‑M1/1‑13 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 1:2655575‑M1/49‑38 (MQ=255) cttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggg < 1:2595777‑M1/49‑38 (MQ=255) ttcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga > 1:4515566‑M1/1‑11 (MQ=255) tcCTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg > 1:3502369‑M1/1‑10 (MQ=255) ccTGGTAGTaaggcgagattattacagttgccatgcagcgtccggggaag > 1:4294447‑M1/1‑9 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag > 1:1709891‑M1/1‑9 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggga < 1:4616722‑M1/48‑40 (MQ=255) ccTGGTAGTaaggcgagattattaaagttgccatgcagcgtccgggg < 1:6012032‑M1/47‑39 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:116050‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaagt < 1:727447‑M1/50‑43 (MQ=255) cTGGTAGTaaggcgagattattaaagttgccatgcagcgtccggggaag < 1:4134508‑M1/49‑42 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt > 1:2564515‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgtt > 1:6166390‑M1/1‑5 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 1:2493441‑M1/49‑45 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgt < 1:2409731‑M1/49‑45 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtg < 1:6637673‑M1/48‑44 (MQ=255) gtagtaaggcgagattattaaagttgccatgcagcgtccggggaagtg < 1:2652692‑M1/48‑44 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg > 1:1047706‑M1/1‑4 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 1:5501058‑M1/50‑47 (MQ=255) tagtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttg < 1:2673847‑M1/50‑47 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 1:2897254‑M1/1‑3 (MQ=255) agtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg > 1:525569‑M1/1‑3 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttggg < 1:1583407‑M1/50‑49 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:6737533‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:4959994‑M1/49‑48 (MQ=255) gtaaggcgagattattaaagttgccatgcagcgtccggggaagtgttgg < 1:4776850‑M1/49‑48 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1466095‑M1/50‑50 (MQ=255) taaggcgagattattaaagttgccatgcagcgtccggggaagtgttgggc < 1:1098561‑M1/50‑50 (MQ=255) taaggcgagattattaaagctgccatgcagcgtccggggaagtgttgggc > 1:2546247‑M1/1‑1 (MQ=255) | TTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAACAGTTCTG > NC_000913/4555442‑4555539 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |