| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 4,555,491 | Δ41,523 bp | [yjiC]–lgoD | 37 genes [yjiC], ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, rpnD, yjiR, yjiS, yjiT, yjiV, mcrC, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 4555491 | 4597013 | 41523 | 108 [0] | [0] 106 | [yjiC]–lgoD | [yjiC],ytiC,ytiD,idlP,iraD,hypT,iadA,yjiG,yjiH,kptA,yjiJ,yjiK,ytiA,yjiL,yjiM,yjiN,mdtM,rpnD,yjiR,yjiS,yjiT,yjiV,mcrC,mcrB,symE,symR,hsdS,hsdM,hsdR,mrr,yjiA,yjiX,btsT,tsr,lgoT,lgoR,lgoD |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4555490 | 0 (0.000) | 101 (1.160) | 62/96 | 0.0 | 100% | coding (831/831 nt) | yjiC | uncharacterized protein YjiC |
| ? | NC_000913 | 4597014 = | 0 (0.000) | intergenic (+2/+136) | lgoD/opgB | L‑galactonate oxidoreductase/phosphoglycerol transferase I | |||||
Only 100 of 106 total aligned reads displayed.
GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 | tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:4468704‑M2/1‑1 (MQ=255)tttagctatctgtataacctgaatgttagtactcattcttcctggtagta < 1:5669942‑M2/1‑1 (MQ=255) tagctatctgtataacctgaatgttagtactcattcttcctggtagtaa < 1:6056155‑M2/2‑1 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAgg > 1:1235953‑M2/47‑50 (MQ=255) agctatctgtataacctgaatgttagtactcattcttcctggtagtAAg < 1:5017133‑M2/3‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 1:2351393‑M2/5‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc < 1:5385608‑M2/5‑1 (MQ=255) gctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:6029573‑M2/46‑50 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1484997‑M2/45‑49 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggtagtAAGGCg < 1:1175141‑M2/6‑1 (MQ=255) ctatctgtataacctgaatgttagtactcattcttcctggcagtAAGGc > 1:4335650‑M2/45‑49 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:6255419‑M2/44‑48 (MQ=255) tatctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:1803412‑M2/44‑48 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:522650‑M2/43‑47 (MQ=255) atctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:2938580‑M2/43‑47 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGc > 1:42789‑M2/42‑46 (MQ=255) tctgtataacctgaatgttagtactcattcttcctggtagtAAGGCgag < 1:1644913‑M2/8‑1 (MQ=255) gtataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatta > 1:1769193‑M2/39‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:396840‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCgaga < 1:2392873‑M2/9‑1 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:1199164‑M2/38‑50 (MQ=255) tataacctgaatgttagtactcattcttcctggtagtAAGGCGAGatt < 1:5794042‑M2/11‑1 (MQ=255) ataacctgaatgttagtactcattcttcctggtagtAAGGCGAGattat > 1:3404035‑M2/37‑49 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGattatt < 1:4894322‑M2/14‑1 (MQ=255) taacctgaatgttagtactcattcttcctggtagtAAGGCGAGAttatta < 1:720853‑M2/15‑1 (MQ=255) acctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTaa < 1:127600‑M2/16‑1 (MQ=255) cctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAg > 1:1435125‑M2/33‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:1870264‑M2/32‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:5164118‑M2/32‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt > 1:3359730‑M2/32‑50 (MQ=255) ctgaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGt < 1:3236839‑M2/19‑1 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:1575459‑M2/30‑50 (MQ=255) gaatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg > 1:6669553‑M2/30‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:4136724‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:3400061‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:1086121‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGtt < 1:2714440‑M2/20‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:2600940‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTg < 1:5441652‑M2/21‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc < 1:3167691‑M2/22‑1 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:60556‑M2/29‑50 (MQ=255) aatgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGc > 1:4751424‑M2/29‑50 (MQ=255) atgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGcc < 1:515032‑M2/23‑1 (MQ=255) tgttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCa < 1:434277‑M2/24‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCAt < 1:1991435‑M2/25‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:5031273‑M2/26‑1 (MQ=255) ttagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg < 1:4151046‑M2/26‑1 (MQ=255) tagtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:4413534‑M2/24‑49 (MQ=255) agtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATg > 1:361282‑M2/23‑48 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:3166776‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCa < 1:3369071‑M2/28‑1 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg > 1:4221806‑M2/22‑50 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg > 1:4396102‑M2/22‑50 (MQ=255) gtactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAg < 1:1711966‑M2/29‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:5260795‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc < 1:1093667‑M2/30‑1 (MQ=255) tactcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGc > 1:1681670‑M2/21‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:417324‑M2/20‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:1224295‑M2/20‑50 (MQ=255) actcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCg > 1:5154723‑M2/20‑50 (MQ=255) tcattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTc > 1:2968761‑M2/18‑50 (MQ=255) cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc > 1:6389875‑M2/17‑50 (MQ=255) cattcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc > 1:6192872‑M2/17‑50 (MQ=255) attcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTcc < 1:6285913‑M2/34‑1 (MQ=255) ttcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgg > 1:3325551‑M2/15‑50 (MQ=255) tcttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg > 1:4029075‑M2/14‑50 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:2595777‑M2/37‑1 (MQ=255) cttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCggg < 1:2655575‑M2/37‑1 (MQ=255) ttcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa > 1:4515566‑M2/12‑50 (MQ=255) tcctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg > 1:3502369‑M2/11‑48 (MQ=255) cctggtagtAAGGCGAGATTATTACAGTTGCCATGCAGCGTCCGGGGAAg > 1:4294447‑M2/10‑50 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCgggg < 1:6012032‑M2/38‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGa < 1:4616722‑M2/39‑1 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:1709891‑M2/10‑50 (MQ=255) cctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg > 1:5199484‑M2/10‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt > 1:612629‑M2/9‑50 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:116050‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgt < 1:727447‑M2/42‑1 (MQ=255) ctggtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAg < 1:4134508‑M2/41‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:2409731‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtgt < 1:2493441‑M2/44‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg < 1:6637673‑M2/43‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAgtg < 1:2652692‑M2/43‑1 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:2564515‑M2/6‑50 (MQ=255) gtagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGtt > 1:6166390‑M2/6‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:4589132‑M2/46‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg < 1:5501058‑M2/46‑1 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:1466297‑M2/5‑50 (MQ=255) tagtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTg > 1:1047706‑M2/5‑50 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 1:525569‑M2/4‑50 (MQ=255) agtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg > 1:2897254‑M2/4‑50 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTggg < 1:1583407‑M2/48‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:6737533‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:4776850‑M2/47‑1 (MQ=255) gtAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTgg < 1:4959994‑M2/47‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:1098561‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGc < 1:1466095‑M2/49‑1 (MQ=255) tAAGGCGAGATTATTAAAGCTGCCATGCAGCGTCCGGGGAAGTGTTGGGc > 1:2546247‑M2/2‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:3237116/1‑50 (MQ=255) aaGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGgcg > 1:2945926/1‑50 (MQ=255) | GATGTGATTAACAATCGTGAGTTAATTAAAGGCGTAATTACTTTCTGATAAGGCGAGATTATTAAAGTTGCCATGCAGCGTCCGGGGAAGTGTTGGGCG > NC_000913/4596965‑4597063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |